Gene omics information

Query gene ID	Zm.11872.1.A1_at
Gene name	metal ion binding protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.11872.1.A1_at	BM381418	metal ion binding protein	-	7e-2	At4g39700	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	S.X.	H.G.	Please select
0.63	81.1	Zm.3134.2.S1_at	AI770607	aldehyde dehydrogenase 3B1	-	8e-1	At3g23000	CIPK7 (CBL-INTERACTING PROTEIN KINASE 7)	S.X.	H.G.	Please select
0.61	79.5	Zm.5788.1.A1_at	AI600957	hypothetical protein LOC100280278	-	5e+0	At5g55190	RAN3 (RAN GTPASE 3)	S.X.	H.G.	Please select
0.56	74.4	Zm.7012.7.A1_a_at	AI881466	ribosomal protein S8	-	1e-55	At5g59240	40S ribosomal protein S8 (RPS8B)	S.X.	H.G.	Please select
0.50	65.7	Zm.5539.1.A1_at	BG842565	hypothetical protein LOC100276652	-	5e+0	At5g03090	unknown protein	S.X.	H.G.	Please select
0.47	59.9	Zm.6560.1.S1_at	Z29518.1	phospholipid synthesis1	-	8e-35	At3g57650	LPAT2	S.X.	H.G.	Please select
0.29	28.1	Zm.6558.1.S1_at	AF073329.1	eukaryotic initiation factor3	-	1e-10	At4g11420	EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.6	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.7	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
7.2	97.8	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-7	56	Zm.6067.2.A1_at	CA401344	hypothetical protein LOC100277938	-	9e-4	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.05	5e-7	54	Zm.2647.1.A1_at	BG268724	hypothetical protein LOC100192886	-	1e-4	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.15	5e-7	54	Zm.10202.1.A1_at	AY112463.1	farnesylated protein 1	-	3e-8	At5g66110	metal ion binding	C.G.	S.X.	Please select
0.03	8e-6	50	Zm.6067.1.S1_at	CA398401	-	-	6e-2	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.11	1e-4	46	Zm.10204.1.A1_at	CF634444	farnesylated protein 2	-	1e-7	At4g38580	ATFP6 (FARNESYLATED PROTEIN 6)	C.G.	S.X.	Please select
0.03	8e-3	40	Zm.13072.1.S1_at	CD438321	hypothetical protein LOC100193044	-	7e+0	At5g12880	proline-rich family protein	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.4843.1.A1_at	AY112334.1	-	-	2e+0	At5g67580	TRB2	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.34.1.A2_a_at	AY109329.1	Hypothetical protein LOC100192755	-	9e-2	At2g36950	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.34.1.A1_x_at	AF371261.1	opaque2 modifier	-	9e-2	At2g36950	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	7e-2	38	Arabidopsis thaliana	At4g39700	830125	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PFBM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	4e-4	46	Glycine max	GmaAffx.61177.1.S1_at	CA801992	-	-	9e-10	At4g39700	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.16	6e-10	63	Hordeum vulgare	Contig16185_at	Contig16185	-	-	5e-1	At5g66110	metal ion binding	C.G.	S.X.	Please select
0.51	2e-71	270	Oryza sativa	OsAffx.17261.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	1e-4	48	Populus trichocarpa	PtpAffx.101268.1.A1_at	CV257146	-	-	4e-7	At4g39700	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	5e-12	71	Triticum aestivum	Ta.4941.1.S1_at	BT009077.1	-	-	5e-4	At5g66110	metal ion binding	C.G.	S.X.	Please select
0.10	2e-2	38	Vitis vinifera	1612795_at	CD797772	hypothetical protein LOC100245736	-	4e-8	At4g39700	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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