Gene omics information

Query gene ID	Zm.11871.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.90	97.0	Zm.11871.1.A1_at	BM381412	-	-	1e+0	At5g55140	ribosomal protein L30 family protein	S.X.	H.G.	Please select
0.53	69.1	Zm.14438.1.A1_at	CO520860	VAMP-like protein YKT62	-	4e-12	At5g58180	ATYKT62	S.X.	H.G.	Please select
0.50	65.7	Zm.12577.1.A1_at	AF527610.1	DNA methyl transferase 106	-	3e-1	At3g25680	-	S.X.	H.G.	Please select
0.48	61.3	Zm.13343.1.S1_at	CA832209	Hypothetical protein LOC100192517	-	4e+1	At5g45880	pollen Ole e 1 allergen and extensin family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.8552.1.A1_at	BM347529	hypothetical protein LOC100275365	-	1e+0	At1g35340	ATP-dependent protease La (LON) domain-containing protein	S.X.	H.G.	Please select
0.44	55.7	Zm.4976.2.A1_x_at	BE344583	hypothetical protein LOC100194138	-	6e-2	At4g34450	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative	S.X.	H.G.	Please select
0.40	48.5	Zm.16748.1.A1_at	CB411054	OB-fold nucleic acid binding domain containing protein	-	1e-1	At2g33845	DNA-binding protein-related	S.X.	H.G.	Please select
0.38	44.2	Zm.8697.2.A1_at	BQ619221	IN2-1 protein	-	3e-6	At5g02790	In2-1 protein, putative	S.X.	H.G.	Please select
0.37	42.3	Zm.6452.1.A1_at	AY111519.1	hypothetical protein LOC100279663	-	4e+0	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	S.X.	H.G.	Please select
0.36	41.3	Zm.12034.1.A1_at	BM382798	hypothetical protein LOC100273559	-	4e+0	At1g08570	ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.5	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	3e-154	543	Zm.18231.1.A1_at	CB603833	hypothetical protein LOC100272366	-	2e+0	At1g64370	unknown protein	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.9763.1.A1_at	BM338608	-	-	1e+0	At3g10590	myb family transcription factor	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.6066.1.A1_at	CF635836	-	-	2e-1	At1g30690	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.721.1.A1_at	BM267834	Salt-inducible putative protein serine/threonine/tyrosine kinase	-	1e-33	At1g06700	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.7332.1.S1_at	CF013037	kinesin-like protein9	-	2e-24	At3g16630	KINESIN-13A	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.5102.1.S1_at	AI600843	hypothetical protein LOC100273584	-	9e-11	At5g08020	RPA70B (RPA70-KDA SUBUNIT B)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.1368.1.A1_at	CA399867	calcineurin B-like protein 3	-	3e-40	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4805.1.A1_at	CD441355	heat shock protein 70 kDa	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.3081.1.A1_x_at	CD438917	heat shock protein1	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g55140	835607	ribosomal protein L30 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, large ribosomal subunit;BOPM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-2	40	Glycine max	PsAffx.CL1710Contig1_at	PsAffx.CL1710Contig1	-	-	7e+0	At4g21930	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Hordeum vulgare	Contig23773_at	Contig23773	-	-	1e+0	At5g14070	ROXY2	C.G.	S.X.	Please select
0.07	2e-10	67	Oryza sativa	Os08g0431100	AK070049.1	-	-	2e-2	At5g55600	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	Ptp.3050.2.A1_at	CK092654	-	-	3e+0	At5g42780	AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	9e-2	38	Triticum aestivum	TaAffx.120437.1.A1_at	BJ219722	-	-	2e+0	At1g53625	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1614942_at	CB346374	-	-	2e-1	At2g37120	DNA-binding S1FA family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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