CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.11836.1.A1_s_at

Gene name hypothetical protein LOC100193763

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 85.8 Zm.11836.1.A1_s_at BM381136 hypothetical protein LOC100193763 - 3e-1 At1g52470 hydrolase S.X. H.G.
0.67 85.8 Zm.9621.1.A1_at BM333959 ethylene-responsive transcription factor 3 - 4e+0 At1g69490 NAP (NAC-like, activated by AP3/PI) S.X. H.G.
0.61 79.5 Zm.9620.1.A1_at CA403653 alginate regulatory protein AlgP - 2e+0 At1g11850 unknown protein S.X. H.G.
0.50 65.7 Zm.9622.1.A1_at BM350167 Hypothetical protein LOC100191225 - 6e+0 At5g42110 unknown protein S.X. H.G.
0.18 11.6 Zm.9333.1.A1_at BM347779 - - 1e+0 At3g58720 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.07 2.9 Zm.14497.11.S1_at BQ619270 - - 3e-8 At5g59910 HTB4 S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.5 97.8 GSM320443 protocol: mRNA - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7 97.6 GSM253250 ZM_24h_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
6.5 97.5 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1 97.4 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3 96.9 GSM253251 ZM_24h_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
5.2 96.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2 96.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1 96.8 GSM253248 ZM_12h_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
5.1 96.8 GSM253255 ZM_24h_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
5.0 96.7 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 2e-133 474 Zm.17833.1.S1_at CK394754 hypothetical protein LOC100277612 - 2e+0 At3g13740 URF 4-related C.G. S.X.
0.02 5e-1 34 Zm.2540.1.A1_at AY105941.1 spermidine synthase - 2e-3 At1g23820 SPDS1 (spermidine synthase 1) C.G. S.X.
0.02 8e+0 30 Zm.7463.1.A1_at BM078503 hypothetical protein LOC100276250 - 2e+0 At1g21090 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.02 8e+0 30 Zm.7266.1.A1_at BM333277 hypothetical protein LOC100274083 /// thioredoxin h1 protein - 2e-3 At1g19730 ATTRX4 C.G. S.X.
0.02 8e+0 30 Zm.5621.1.A1_at CK370677 hypothetical protein LOC100273111 - 3e+0 At2g33990 iqd9 (IQ-domain 9) C.G. S.X.
0.01 8e+0 30 Zm.4729.1.A1_at AI738324 - - 9e-17 At5g55230 ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1) C.G. S.X.
0.01 8e+0 30 Zm.4402.1.A1_at AW091394 hypothetical protein LOC100193028 - 1e-3 At5g21160 La domain-containing protein / proline-rich family protein C.G. S.X.
0.01 8e+0 30 Zm.14412.1.S1_a_at BM337383 hypothetical protein LOC100194289 - 4e-15 At4g18100 60S ribosomal protein L32 (RPL32A) C.G. S.X.
0.01 8e+0 30 Zm.1083.1.S1_at AF527618.1 methyl binding domain - 9e-1 At1g11240 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Arabidopsis thaliana At1g52470 841678 hydrolase F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;PMO - - - C.G. S.X.
0.04 2e+0 34 Glycine max GmaAffx.35649.1.A1_at BE822077 - - 3e+0 At4g01535 unknown protein C.G. S.X.
0.10 7e-19 93 Hordeum vulgare Contig15646_at Contig15646 - - 6e-1 At5g18520 - C.G. S.X.
0.11 3e-15 83 Oryza sativa Os11g0237700 CB665960 - Uncharacterised conserved protein UCP005520 familyprotein 7e+0 At5g16453 - C.G. S.X.
0.03 6e+0 32 Populus trichocarpa PtpAffx.85220.1.S1_at DN488269 hypothetical protein - 7e+0 Atmg00120 - C.G. S.X.
0.11 6e-15 81 Triticum aestivum Ta.27727.2.S1_at CA684836 - - 1e+0 At5g02760 protein phosphatase 2C family protein / PP2C family protein C.G. S.X.
0.04 5e+0 30 Vitis vinifera 1616050_at CF373308 hypothetical protein LOC100244878 - 9e+0 At5g06280 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage