Gene omics information

Query gene ID	Zm.11832.1.S1_at
Gene name	hypothetical protein LOC100277564
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.11832.1.S1_at	BM381116	hypothetical protein LOC100277564	-	1e-7	At1g57540	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.457.1.S1_at	AF147725.1	ribosomal protein L29	-	2e+0	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	S.X.	H.G.	Please select
0.44	55.7	Zm.17643.1.S1_at	CK368600	-	-	2e-1	At5g54850	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.7131.1.A1_at	AY108795.1	hypothetical protein LOC100191916	-	1e-9	At3g06170	TMS membrane family protein / tumour differentially expressed (TDE) family protein	S.X.	H.G.	Please select
0.34	37.2	Zm.13617.1.A1_at	CF028226	hypothetical protein LOC100192113	-	2e-10	At2g47590	PHR2 (photolyase/blue-light receptor 2)	S.X.	H.G.	Please select
0.31	31.6	Zm.6230.1.A1_at	AI649825	hypothetical protein LOC100279247	-	1e-15	At2g25737	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	97.3	GSM205429	B73xMo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
5.1	96.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM205423	B73xMo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.9	96.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
3.7	95.4	GSM205436	B73xMo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.7	95.4	GSM205421	B73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	38	Zm.2365.2.S1_at	AI739988	hypothetical protein LOC100216757	-	1e-14	At1g64040	TOPP3	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.2365.2.S1_x_at	AI739988	hypothetical protein LOC100216757	-	1e-14	At1g64040	TOPP3	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.52.1.A1_at	AB021175.1	root cap protein 1	-	2e+0	At5g60520	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.17831.1.S1_at	AY472082.1	narrow sheath2	-	5e-17	At2g28610	PRS (PRESSED FLOWER)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.11958.1.A1_at	AY560384.1	elongated mesocotyl1	-	2e+0	At3g04670	WRKY39	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.587.1.A1_at	AF243043.1	DNA cytosine methyltransferase MET2a	-	4e-1	At1g69770	CMT3 (chromomethylase 3)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.5827.1.A1_at	BQ539573	meiosis 5	-	1e-1	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.3627.1.A1_at	BM334459	RING-H2 finger protein ATL2B	-	3e+0	At5g57750	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.328.1.S1_at	U89496.1	liguleless1	-	2e-1	At1g56530	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-7	57	Arabidopsis thaliana	At1g57540	842129	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	HgAffx.5651.1.S1_at	CB826560	-	-	1e+0	At1g14150	oxygen evolving enhancer 3 (PsbQ) family protein	C.G.	S.X.	Please select
0.24	5e-36	151	Hordeum vulgare	Contig10958_at	Contig10958	-	-	2e-6	At1g57540	unknown protein	C.G.	S.X.	Please select
0.25	1e-55	218	Oryza sativa	Os01g0250600	CF328719	-	Conserved hypothetical protein	2e-5	At1g57540	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e+0	32	Populus trichocarpa	PtpAffx.85962.1.S1_at	BU814383	-	-	8e-2	At5g09510	40S ribosomal protein S15 (RPS15D)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	2e-34	147	Triticum aestivum	Ta.9032.1.S1_at	BQ162794	-	-	8e-9	At1g57540	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1619420_at	CF403238	hypothetical protein LOC100260711	-	2e+0	At3g26870	self-incompatibility protein-related	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage