Gene omics information

Query gene ID	Zm.11830.1.S1_at
Gene name	protein grpE
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.11830.1.S1_at	CA398394	protein grpE	-	2e-3	At5g17710	EMB1241 (embryo defective 1241)	S.X.	H.G.	Please select
0.36	41.3	Zm.13584.1.A1_at	AY107853.1	-	-	1e-72	At1g21640	NADK2	S.X.	H.G.	Please select
0.36	41.3	Zm.7753.1.A1_at	BM337798	hypothetical protein LOC100191438	-	3e-2	At2g48010	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	S.X.	H.G.	Please select
0.36	41.3	Zm.7370.1.A1_at	BM382341	beta-expansin 1a	-	5e-1	At1g20220	nucleic acid binding	S.X.	H.G.	Please select
0.13	6.8	Zm.7559.1.A1_at	AY110410.1	-	-	6e-3	At5g48370	thioesterase family protein	S.X.	H.G.	Please select
0.09	4.0	Zm.1894.2.S1_at	CK371174	-	-	1e-4	At5g18800	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	S.X.	H.G.	Please select
0.09	4.0	Zm.19297.1.A1_at	CO524882	hypothetical protein LOC100193577	-	2e-2	At3g49800	BSD domain-containing protein	S.X.	H.G.	Please select
0.07	2.9	Zm.12546.2.A1_at	AI770557	-	-	3e+0	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.3	97.8	GSM253247	ZM_12h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
7.1	97.7	GSM253244	ZM_12h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.7	97.6	GSM253245	ZM_12h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
6.5	97.5	GSM253252	ZM_24h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.5	97.5	GSM253251	ZM_24h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
6.4	97.5	GSM253250	ZM_24h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.3	97.4	GSM323171	Zm_SG200Dpep1_24hpi_II	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
6.0	97.3	GSM253255	ZM_24h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
5.9	97.3	GSM323170	Zm_SG200Dpep1_24hpi_I	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
5.7	97.2	GSM253246	ZM_12h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-5	50	Zm.2199.2.S1_at	CA404051	IWS1 C-terminus family protein	-	2e-17	At1g32130	-	C.G.	S.X.	Please select
0.02	6e-5	48	Zm.6372.1.S1_at	AI691601	-	-	8e+0	At4g25830	integral membrane family protein	C.G.	S.X.	Please select
0.02	6e-5	48	Zm.19180.1.S1_at	CO523146	gamma-secretase subunit APH-1B	-	1e-11	At2g31440	protein binding	C.G.	S.X.	Please select
0.02	6e-5	48	Zm.17327.1.S1_at	CK144386	-	-	2e+0	At3g04640	glycine-rich protein	C.G.	S.X.	Please select
0.02	3e-4	46	Zm.14411.1.A1_a_at	AI491646	membrane steroid-binding protein 1	-	7e-16	At3g48890	ATMP2	C.G.	S.X.	Please select
0.02	1e-3	44	Zm.2245.4.A1_at	BM350915	-	-	2e+0	At5g18300	anac088 (Arabidopsis NAC domain containing protein 88)	C.G.	S.X.	Please select
0.01	4e-3	42	Zm.4871.1.A1_at	AY109978.1	growth-regulating factor 1	-	1e-18	At2g22840	AtGRF1 (GROWTH-REGULATING FACTOR 1)	C.G.	S.X.	Please select
0.02	4e-3	42	Zm.12327.1.A1_at	BM380919	hypothetical protein LOC100279662	-	5e-11	At3g02990	ATHSFA1E	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.4669.1.S1_at	AI737897	Growth-regulating factor 9-like	-	5e-5	At3g52910	AtGRF4 (GROWTH-REGULATING FACTOR 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-3	44	Arabidopsis thaliana	At5g17710	831638	EMB1241 (embryo defective 1241)	F:protein binding, chaperone binding, protein homodimerization activity, adenyl-nucleotide exchange factor activity;P:embryonic development ending in seed dormancy, protein folding;C:thylakoid, chloroplast, chloroplast stroma;BOMFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-16	87	Glycine max	Gma.6954.2.S1_at	BM885392	-	-	7e-17	At5g17710	EMB1241 (embryo defective 1241)	C.G.	S.X.	Please select
0.36	1e-89	329	Hordeum vulgare	Contig12854_at	Contig12854	-	-	7e-4	At1g36390	co-chaperone grpE family protein	C.G.	S.X.	Please select
0.46	2e-94	347	Oryza sativa	OsAffx.24653.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-2	42	Populus trichocarpa	Ptp.4435.1.S1_s_at	CV258200	hypothetical protein	-	3e-12	At5g17710	EMB1241 (embryo defective 1241)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e-1	38	Triticum aestivum	TaAffx.38148.2.S1_at	CA734765	-	-	1e+0	At2g23610	MES3 (METHYL ESTERASE 3)	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1622392_at	CF202961.1	hypothetical protein LOC100264712	-	5e-6	At5g17190	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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