Gene omics information

Query gene ID	Zm.11822.1.A1_at
Gene name	hypothetical protein LOC100217292
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.11822.1.A1_at	BM381027	hypothetical protein LOC100217292	-	2e+1	At5g62030	diphthamide synthesis DPH2 family protein	S.X.	H.G.	Please select
0.37	42.3	Zm.11650.1.A1_at	BM379683	hypothetical protein LOC100192105	-	4e+0	At2g12405	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.2234.3.A1_a_at	CO526105	hypothetical protein LOC100273895	-	9e-9	At4g17180	glycosyl hydrolase family 17 protein	S.X.	H.G.	Please select
0.35	38.9	Zm.18460.1.S1_at	CO521354	hypothetical protein LOC100216873	-	8e-3	At1g60430	ARPC3 (actin-related protein C3)	S.X.	H.G.	Please select
0.31	31.6	Zm.13712.1.S1_at	AY106534.1	-	-	4e+0	At2g46640	unknown protein	S.X.	H.G.	Please select
0.30	29.8	Zm.19135.1.A1_at	CO526574	-	-	2e-1	At3g17730	anac057 (Arabidopsis NAC domain containing protein 57)	S.X.	H.G.	Please select
0.29	28.1	Zm.7847.1.A1_at	BM080149	-	-	1e+0	At3g27416	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.13208.1.S1_at	CA402017	protein binding protein	-	2e-1	At1g07000	ATEXO70B2 (exocyst subunit EXO70 family protein B2)	S.X.	H.G.	Please select
0.29	28.1	Zm.12065.1.S1_at	CD219268	hypothetical protein LOC100275823	-	5e-1	At5g52605	-	S.X.	H.G.	Please select
0.27	24.6	Zm.15333.1.S1_at	CO519768	hypothetical protein LOC100216740	-	3e-6	At3g07940	zinc finger and C2 domain protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.2	99.2	GSM206292	Upper pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
18.0	99.2	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.3	98.2	GSM258535	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 3	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
8.5	98.1	GSM202408	Zmet2 study 11-day seedling aerial tissue genotype B73 Rep6	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
8.2	98.0	GSM258534	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 2	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
7.4	97.8	GSM202409	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep6	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
7.2	97.8	GSM202405	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep5	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
7.1	97.7	GSM258536	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 3	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
6.1	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM258537	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 4	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-4	44	Zm.12586.1.S1_at	BU049229	-	-	2e-1	At1g14180	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.3866.1.S1_at	CK370021	D-amino acid oxidase	-	3e+0	At1g51760	IAR3 (IAA-ALANINE RESISTANT 3)	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.8321.1.S1_at	CO528265	calcium-dependent protein kinase, isoform AK1	-	3e+0	At5g61350	protein kinase family protein	C.G.	S.X.	Please select
0.01	4e-1	34	Zm.4776.2.A1_at	CF026718	pyruvate dehydrogenase E1 component alpha subunit	-	1e-39	At1g59900	AT-E1 ALPHA	C.G.	S.X.	Please select
0.01	4e-1	34	Zm.3896.1.S1_at	CD995552	penicillin-binding protein 2	-	9e-1	At3g06180	structural constituent of ribosome	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.2964.1.S1_at	AY106674.1	Hypothetical protein LOC100191774	-	2e-4	At1g06690	aldo/keto reductase family protein	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.2964.1.S1_s_at	AY106674.1	hypothetical protein LOC100191774	-	2e-4	At1g06690	aldo/keto reductase family protein	C.G.	S.X.	Please select
0.03	4e-1	34	Zm.15878.1.A1_at	BM351620	Hypothetical protein LOC100191774	-	2e+0	At2g47400	CP12-1	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.607.1.A1_at	AF326495.1	plasma membrane integral protein ZmPIP2-6	-	2e-25	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+1	30	Arabidopsis thaliana	At5g62030	836323	diphthamide synthesis DPH2 family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.6026.1.S1_at	BU550736	-	-	3e+0	At4g22115	SCRL14 (SCR-Like 14)	C.G.	S.X.	Please select
0.07	3e-2	38	Hordeum vulgare	Contig10756_x_at	Contig10756	-	-	2e+1	At5g53820	unknown protein	C.G.	S.X.	Please select
Os02g0560700	0.14	2e-31	Oryza sativa	Os02g0559500	9630.m03370	-	-	6e-1	At4g15760	MO1 (MONOOXYGENASE 1)	C.G.	S.X.	Please select
0.03	6e+0	32	Populus trichocarpa	PtpAffx.223348.1.S1_at	pmrna41296	hypothetical protein	-	1e+0	At5g16010	3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.1062.1.S1_x_at	CA652693	-	-	3e+1	At5g64450	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1615179_at	CF200647.1	-	-	1e+1	At3g10525	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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