Gene omics information

Query gene ID	Zm.11815.1.A1_a_at
Gene name	hypothetical protein LOC100278908
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.11815.1.A1_a_at	BM380954	hypothetical protein LOC100278908	-	4e-1	At2g07706	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.6804.1.A1_at	CA403463	hypothetical protein LOC100280289	-	2e-66	At2g34250	protein transport protein sec61, putative	S.X.	H.G.	Please select
0.60	77.8	Zm.4300.2.A1_at	AI881611	-	-	3e-8	At5g09880	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.44	55.7	Zm.17832.1.S1_at	AB112937.1	plastidic general dicarboxylate transporter	-	7e-8	At5g64290	DIT2.1 (DICARBOXYLATE TRANSPORT 2.1)	S.X.	H.G.	Please select
0.44	55.7	Zm.13784.1.S1_at	CF626786	hypothetical protein LOC100192064	-	1e-5	At1g74260	PUR4 (purine biosynthesis 4)	S.X.	H.G.	Please select
0.42	51.3	Zm.258.1.S1_s_at	X67323.1	hypothetical protein LOC100275973	-	2e-3	At3g09032	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.6	98.6	GSM253245	ZM_12h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
10.7	98.5	GSM253246	ZM_12h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
10.6	98.4	GSM253255	ZM_24h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
10.1	98.4	GSM253252	ZM_24h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
10.1	98.4	GSM253251	ZM_24h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
9.7	98.3	GSM253248	ZM_12h_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
9.7	98.3	GSM253247	ZM_12h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
9.6	98.3	GSM323171	Zm_SG200Dpep1_24hpi_II	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
9.4	98.3	GSM253244	ZM_12h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
8.8	98.1	GSM253250	ZM_24h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.71	0	1067	Zm.11815.2.A1_at	CF633924	-	-	5e-1	At2g07706	unknown protein	C.G.	S.X.	Please select
0.07	2e-32	139	Zm.3359.1.A1_at	AY106342.1	Hypothetical protein LOC100194208	-	2e+0	At4g00280	-	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.4797.1.A1_at	AY103804.1	fibrillarin-2	-	8e-16	At5g52470	FIB1 (FIBRILLARIN 1)	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.4764.1.S1_at	AI739879	vacuolar protein sorting 37C	-	2e-3	At2g36680	-	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.7460.1.A1_at	CA403853	Hypothetical protein LOC100193336	-	1e-4	At1g08780	AIP3 (ABI3-INTERACTING PROTEIN 3)	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.2418.1.S1_at	BM379344	VIP3 protein	-	1e-4	At1g08780	AIP3 (ABI3-INTERACTING PROTEIN 3)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.6532.2.S1_at	CO518285	DNA binding protein	-	3e+0	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.18453.1.A1_at	CO523307	LOL3	-	5e+0	At2g28700	AGL46 (AGAMOUS-LIKE 46)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.9562.1.S1_at	D88452.1	aldehyde oxidase-2	-	4e-5	At5g20960	AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	36	Arabidopsis thaliana	At2g07706	815381	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	PsAffx.psZS013xL21f_at	PsAffx.psZS013xL21f	-	-	5e+0	At5g26622	beta-galactosidase	C.G.	S.X.	Please select
0.42	2e-100	365	Hordeum vulgare	Contig15509_at	Contig15509	-	-	2e-3	At1g10522	unknown protein	C.G.	S.X.	Please select
0.41	3e-83	309	Oryza sativa	Os09g0382400	AK062891.1	-	Conserved hypothetical protein	4e-1	At1g10522	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.219663.1.S1_at	pmrna35630	hypothetical protein	-	1e+1	At3g43505	LCR30 (Low-molecular-weight cysteine-rich 30)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	2e-92	339	Triticum aestivum	Ta.7635.1.A1_at	BG907453	-	-	8e-2	At1g10522	unknown protein	C.G.	S.X.	Please select
0.02	7e+0	30	Vitis vinifera	1620035_at	CF405893	-	-	3e-13	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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