Gene omics information

Query gene ID	Zm.11797.1.A1_at
Gene name	hypothetical protein LOC100277496
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	81.7	Zm.11797.1.A1_at	BM380828	hypothetical protein LOC100277496	-	6e+0	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	S.X.	H.G.	Please select
0.78	92.5	Zm.14670.1.S1_at	BM381336	hypothetical protein LOC100193527	-	8e-5	At3g05280	integral membrane Yip1 family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.12506.1.S1_at	AY111499.1	-	-	4e-1	At5g43210	endo/excinuclease amino terminal domain-containing protein	S.X.	H.G.	Please select
0.67	85.8	Zm.4677.1.S1_at	AY105413.1	-	-	9e-1	At3g18260	reticulon family protein (RTNLB9)	S.X.	H.G.	Please select
0.55	71.6	Zm.10477.1.S1_at	CF010434	nitrate-induced NOI protein	-	6e-3	At5g63270	nitrate-responsive NOI protein, putative	S.X.	H.G.	Please select
0.53	69.1	Zm.18775.1.A1_at	BM074499	calcium/calmodulin dependent protein kinase-like	-	2e+0	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.2825.3.A1_a_at	CB350765	hypothetical protein LOC100192808 /// hypothetical protein LOC100272443 /// hypothetical protein LOC100273769	-	3e-29	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	S.X.	H.G.	Please select
0.38	44.2	Zm.1179.1.S1_at	AJ006539	hypothetical protein LOC100273704	-	1e+1	At5g63030	glutaredoxin, putative	S.X.	H.G.	Please select
0.23	18.6	Zm.6445.1.A1_at	AI692009	-	-	1e+1	At5g04238	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.4	99.0	GSM206328	Upper pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
12.6	98.7	GSM206334	Lower pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.8	98.6	GSM206330	Lower pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.9	98.5	GSM206316	Upper pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.9	98.5	GSM206318	Lower pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.8	98.5	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.6	98.4	GSM206322	Lower pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.7	98.1	GSM206301	Upper pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.4	98.1	GSM206319	Lower pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.2	98.0	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-6	52	Zm.4699.1.S1_at	CK787284	hypothetical protein LOC100273144	-	3e+0	At5g63480	unknown protein	C.G.	S.X.	Please select
0.03	3e-6	52	Zm.3374.1.S1_at	BM380917	-	-	3e+0	At1g21864	-	C.G.	S.X.	Please select
0.03	3e-6	52	Zm.3073.1.A1_at	AY111277.1	nucleoside diphosphate kinase 2	-	5e-29	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	C.G.	S.X.	Please select
0.04	3e-6	52	Zm.1911.1.A1_a_at	AY108229.1	hypothetical protein LOC100191691 /// hypothetical protein LOC100276993	-	1e+0	At5g46730	glycine-rich protein	C.G.	S.X.	Please select
0.04	3e-6	52	Zm.1911.1.A1_at	AY108229.1	hypothetical protein LOC100191691	-	1e+0	At5g46730	glycine-rich protein	C.G.	S.X.	Please select
0.02	1e-5	50	Zm.8336.1.S2_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	C.G.	S.X.	Please select
0.02	1e-5	50	Zm.8336.1.S1_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	C.G.	S.X.	Please select
0.02	1e-5	50	Zm.8336.1.S1_x_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	C.G.	S.X.	Please select
0.04	1e-5	50	Zm.6913.2.A1_a_at	AI065646	-	-	9e-1	At2g16060	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e+0	32	Arabidopsis thaliana	At5g16390	831500	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	Encodes for the biotin carboxyl-carrier subunit of the multi-enzyme plastidial acetyl-coenzyme A carboxylase complex.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-5	50	Glycine max	GmaAffx.12286.2.S1_at	BM108265	-	-	1e-11	At5g38510	rhomboid family protein	C.G.	S.X.	Please select
0.04	2e-4	46	Hordeum vulgare	Contig13088_at	Contig13088	-	-	3e+0	At4g12440	adenine phosphoribosyltransferase, putative	C.G.	S.X.	Please select
0.03	5e-5	50	Oryza sativa	Os11g0479000	AK107976.1	-	Hypothetical protein	4e-1	At5g19875	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.16419.1.S1_at	CX654747	hypothetical protein	-	3e-1	At3g25640	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-5	50	Triticum aestivum	TaAffx.83046.1.S1_at	CA662735	-	-	3e+0	At2g35658	unknown protein	C.G.	S.X.	Please select
0.04	8e-6	50	Vitis vinifera	1614133_at	CD711415	hypothetical protein LOC100255873	-	5e-2	At1g43800	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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