Gene omics information

Query gene ID	Zm.11783.1.A1_at
Gene name	hypothetical protein LOC100191487
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.11783.1.A1_at	BM380733	hypothetical protein LOC100191487	-	4e+0	At5g42510	disease resistance-responsive family protein	S.X.	H.G.	Please select
0.80	94.0	Zm.2784.1.A1_at	CF629950	hypothetical protein LOC100276915	-	5e-8	At5g17420	IRX3 (IRREGULAR XYLEM 3)	S.X.	H.G.	Please select
0.57	75.1	Zm.2901.1.A1_at	BM351614	hypothetical protein LOC100277716	-	2e+0	At5g58784	dehydrodolichyl diphosphate synthase	S.X.	H.G.	Please select
0.57	75.1	Zm.11378.1.A1_at	CB351158	hypothetical protein LOC100272914	-	6e-1	At5g06610	unknown protein	S.X.	H.G.	Please select
0.57	75.1	Zm.390.1.S1_at	U32579.1	dwarf plant3	-	4e+0	At4g39260	GR-RBP8	S.X.	H.G.	Please select
0.55	71.6	Zm.6948.1.A1_at	AW288752	serine/threonine-protein phosphatase PP1	-	8e-12	At2g29400	TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.1	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.6	97.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	34	Zm.9931.1.A1_at	BM339241	-	-	2e+0	At1g72360	ethylene-responsive element-binding protein, putative	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.13647.1.S1_at	AY107242.1	metal transporter Nramp3	-	3e-12	At5g67330	ATNRAMP4	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.10085.1.A1_at	BM382598	-	-	6e+0	At4g02270	pollen Ole e 1 allergen and extensin family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.958.1.S1_at	AY109128.1	hypothetical protein LOC100279983	-	6e-8	At5g02150	binding	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.4811.1.A1_a_at	CF624047	hypothetical protein LOC100279878 /// UDP-N-acetylglucosamine pyrophosphorylase	-	6e-5	At2g35020	UTP--glucose-1-phosphate uridylyltransferase family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.4811.1.A1_x_at	CF624047	UDP-N-acetylglucosamine pyrophosphorylase	-	6e-5	At2g35020	UTP--glucose-1-phosphate uridylyltransferase family protein	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.8309.1.S1_at	CF626652	quinone oxidoreductase	-	3e-6	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	C.G.	S.X.	Please select
0.01	7e+0	30	Zm.731.1.A1_at	CA404803	-	-	1e-22	At4g26600	nucleolar protein, putative	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.6934.1.A1_at	AY105351.1	hypothetical protein LOC100273323	-	9e-6	At3g01790	ribosomal protein L13 family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At5g42510	834258	disease resistance-responsive family protein	F:molecular_function unknown;P:defense response;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.259.1.S1_at	AW348402	-	-	5e+0	At5g16567	unknown protein	C.G.	S.X.	Please select
0.21	2e-31	135	Hordeum vulgare	HW05J06u_at	HW05J06u	-	-	4e+0	At5g12340	unknown protein	C.G.	S.X.	Please select
0.10	9e-43	174	Oryza sativa	Os01g0948500	AK119342.1	-	ARM repeat fold domain containing protein	3e-1	At4g00590	asparaginase 2 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.225894.1.S1_at	pmrna45541	hypothetical protein	-	6e-1	At5g01445	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.114269.1.S1_at	CA595919	-	-	4e+0	At2g36835	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1615138_at	CF517691	-	-	6e-2	At1g78260	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage