CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.11781.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 88.2 Zm.11781.1.A1_at BM380704 - - 1e+0 At4g40090 AGP3 (arabinogalactan-protein 3) S.X. H.G.
0.40 48.5 Zm.11839.1.A1_at BM381155 hypothetical protein LOC100192935 - 2e+0 At3g11580 DNA-binding protein, putative S.X. H.G.
0.40 48.5 Zm.9079.1.A1_at CN844993 hypothetical protein LOC100217287 - 6e-3 At1g13890 SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) S.X. H.G.
0.35 38.9 Zm.16578.1.A1_a_at CK369163 - - 3e-1 At5g37820 NIP4 S.X. H.G.
0.22 16.9 Zm.10832.1.A1_at BQ619413 - - 5e+0 At4g08190 Ras-related GTP-binding protein, putative S.X. H.G.
0.18 11.6 Zm.1247.1.S1_at BE575051 EARLY flowering 4 protein - 4e+0 At3g17570 F-box family protein S.X. H.G.
0.17 10.6 Zm.12750.2.A1_x_at CD446742 - - 5e-38 At2g21410 VHA-A2 (VACUOLAR PROTON ATPASE A2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.5 98.9 GSM253251 ZM_24h_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
13.1 98.7 GSM323171 Zm_SG200Dpep1_24hpi_II GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
12.2 98.6 GSM253252 ZM_24h_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
11.6 98.6 GSM253253 ZM_24h_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
10.2 98.4 GSM253247 ZM_12h_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
9.6 98.3 GSM323170 Zm_SG200Dpep1_24hpi_I GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
9.5 98.3 GSM253248 ZM_12h_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
9.2 98.2 GSM253255 ZM_24h_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
8.7 98.1 GSM253254 ZM_24h_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
7.7 97.9 GSM253249 ZM_12h_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-4 44 Zm.9464.1.A1_at CF972371 hypothetical protein LOC100272725 - 1e-1 At4g14385 - C.G. S.X.
0.02 2e-3 42 Zm.6606.1.A1_at AI467702 hypothetical protein LOC100272956 - 8e-7 At3g53500 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.02 2e-3 42 Zm.122.1.S1_at AY105634.1 malate dehydrogenase6 - 9e-13 At5g58330 malate dehydrogenase (NADP), chloroplast, putative C.G. S.X.
0.04 7e-3 40 Zm.8846.1.A1_at BM337343 - - 4e+0 At3g29250 copper ion binding / oxidoreductase C.G. S.X.
0.01 7e-3 40 Zm.5646.2.A1_x_at AW257823 hypothetical protein LOC100191650 - 3e-41 At1g04750 VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) C.G. S.X.
0.03 7e-3 40 Zm.3122.1.A1_at CB381414 microtubule motor - 6e-7 At1g23220 dynein light chain type 1 family protein C.G. S.X.
0.03 7e-3 40 Zm.3122.1.S1_at CB381414 - - 6e-7 At1g23220 dynein light chain type 1 family protein C.G. S.X.
0.04 7e-3 40 Zm.16232.1.A1_a_at BG842260 hypothetical protein LOC100278121 - 4e-3 At3g46430 unknown protein C.G. S.X.
0.04 7e-3 40 Zm.16232.1.A1_x_at BG842260 hypothetical protein LOC100278121 - 4e-3 At3g46430 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At4g40090 830172 AGP3 (arabinogalactan-protein 3) F:unknown;P:multicellular organismal development;C:endomembrane system;P - - - C.G. S.X.
0.03 1e-1 38 Glycine max Gma.9721.1.S1_at CA936082 - - 1e+0 At5g21910 unknown protein C.G. S.X.
0.05 1e-4 46 Hordeum vulgare Contig12203_at Contig12203 - - 2e+0 At5g09530 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.10 2e-3 44 Oryza sativa Os07g0599600 AK106214.1 - Hypothetical protein 1e-1 At1g25425 CLE43 (CLAVATA3/ESR-RELATED 43) C.G. S.X.
0.04 4e-1 36 Populus trichocarpa PtpAffx.215403.1.S1_at pmrna29565 hypothetical protein - 3e+0 At3g05230 signal peptidase subunit family protein C.G. S.X.
0.06 5e-3 42 Triticum aestivum TaAffx.28007.1.S1_at CA666596 - - 9e+0 At5g06140 SNX1 (SORTING NEXIN 1) C.G. S.X.
0.04 5e+0 30 Vitis vinifera 1621743_at CB347317 - - 2e+0 At2g32645 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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