Gene omics information

Query gene ID	Zm.11778.1.A1_at
Gene name	hypothetical protein LOC100274745
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	76.1	Zm.11778.1.A1_at	BM380652	hypothetical protein LOC100274745	-	1e+0	At1g11920	pectate lyase family protein	S.X.	H.G.	Please select
0.53	69.1	Zm.1090.2.A1_a_at	BU645209	PVR3-like protein /// PVR3-like protein /// PVR3-like protein	-	1e+0	At3g23930	unknown protein	S.X.	H.G.	Please select
0.47	59.9	Zm.8743.1.A1_at	BM347268	blue copper protein	-	1e-1	At1g72230	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.44	55.7	Zm.18064.1.A1_at	CK347702	-	-	1e+0	At1g66145	CLE18 (CLAVATA3/ESR-RELATED 18)	S.X.	H.G.	Please select
0.25	21.3	Zm.2376.1.A1_x_at	AF001634.1	physical impedance induced protein	-	6e+0	At4g38130	HD1 (HISTONE DEACETYLASE 1)	S.X.	H.G.	Please select
0.06	2.3	Zm.8061.1.S1_at	BM334048	hypothetical protein LOC100276971	-	9e-8	At2g30942	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.2	99.7	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3	99.6	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM202408	Zmet2 study 11-day seedling aerial tissue genotype B73 Rep6	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
6.1	97.4	GSM202282	B73 11-day seedling aerial tissue biological replicate 2	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
6.1	97.4	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
5.7	97.2	GSM202286	B73 11-day seedling aerial tissue biological replicate 3	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
5.6	97.1	GSM202413	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep2	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	34	Zm.8899.1.A1_at	AY105971.1	14-3-3-like protein A	-	1e-13	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.719.1.A1_at	L40957.1	thioredoxin M1	-	5e-1	At1g11684	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.6374.1.S1_at	AI691610	hypothetical protein LOC100274889	-	1e-1	At5g25220	KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.8336.1.S2_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.8336.1.S1_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.8336.1.S1_x_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.6886.1.A1_at	CK786773	hypothetical protein LOC100276053	-	2e-1	At1g64385	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5091.1.S1_at	AI746204	hypothetical protein LOC100193566	-	3e-4	At3g56300	tRNA synthetase class I (C) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.3030.1.A1_at	CA402193	-	-	2e-12	At4g31590	ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At1g11920	837742	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	HgAffx.24021.1.S1_at	CB278582	-	-	3e+0	At2g28355	LCR5 (Low-molecular-weight cysteine-rich 5)	C.G.	S.X.	Please select
0.04	6e-1	34	Hordeum vulgare	HV06B11u_at	HV06B11u	-	-	4e+0	At5g23440	FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)	C.G.	S.X.	Please select
0.02	1e-2	42	Oryza sativa	Os04g0403600	CB625851	-	Protein phosphatase 2C-like domain containingprotein	1e-13	At3g16560	protein phosphatase 2C-related / PP2C-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e-1	36	Populus trichocarpa	PtpAffx.221905.1.S1_s_at	pmrna39017	hypothetical protein	-	2e-4	At5g04350	self-incompatibility protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e+0	32	Triticum aestivum	TaAffx.85457.1.S1_at	CA622627	-	-	2e-5	At2g44520	COX10 (cytochrome c oxidase 10)	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1616988_at	CF516459	-	-	4e+0	At2g04034	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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