Gene omics information

Query gene ID	Zm.11731.1.A1_at
Gene name	helix-loop-helix DNA-binding domain containing protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	58.4	Zm.11731.1.A1_at	BM380291	helix-loop-helix DNA-binding domain containing protein	-	5e-9	At4g09180	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.73	89.9	Zm.13485.1.S1_at	AY108893.1	-	-	3e-1	At5g16540	ZFN3 (ZINC FINGER NUCLEASE 3)	S.X.	H.G.	Please select
0.40	48.5	Zm.10773.1.A1_at	AY105086.1	hypothetical protein LOC100191227	-	1e+0	At1g73010	phosphatase	S.X.	H.G.	Please select
0.21	15.5	Zm.14827.1.S1_at	AJ430635.1	m21 protein	-	1e-1	At1g28200	FIP1 (FH INTERACTING PROTEIN 1)	S.X.	H.G.	Please select
0.16	9.4	Zm.13661.1.A1_at	AY107142.1	-	-	2e+0	At4g25710	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.08	3.4	Zm.2768.1.A1_at	AW067159	Hypothetical protein LOC100193535	-	1e+0	At5g04760	myb family transcription factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.9	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	3e-8	57	Zm.17490.1.A1_a_at	BG840791	helix-loop-helix DNA-binding domain containing protein	-	2e-8	At2g43140	DNA binding / transcription factor	C.G.	S.X.	Please select
0.02	8e-3	40	Zm.2734.1.A1_at	CK985510	homeodomain leucine zipper protein CPHB-5	-	2e-1	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	C.G.	S.X.	Please select
0.02	8e-3	40	Zm.2734.2.S1_at	BF727671	hypothetical protein LOC100279599	-	3e-4	At5g15150	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	C.G.	S.X.	Please select
0.04	3e-2	38	Zm.9494.2.A1_a_at	CK347526	hypothetical protein LOC100193285	-	2e+1	At5g05380	PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.959.1.A1_at	AY103702.1	photosystem I N subunit1	-	1e-4	At5g64040	PSAN	C.G.	S.X.	Please select
0.04	1e-1	36	Zm.800.2.A1_at	AI714523	Phosphoenolpyruvate carboxylase	-	8e-5	At3g14940	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.800.1.S1_at	BG319937	phosphoenolpyruvate carboxylase	-	8e-55	At1g53310	ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1)	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.5605.1.S1_at	CO528780	-	-	1e+0	At1g18680	HNH endonuclease domain-containing protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.3198.1.A1_a_at	CF243896	ubiquitin-conjugating enzyme E2-17 kDa 9 /// ubiquitin-conjugating enzyme E2-17 kDa 9 /// ubiquitin-conjugating enzyme E2-17 kDa 9	-	9e-59	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	5e-9	61	Arabidopsis thaliana	At4g09180	826499	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	3e-5	50	Glycine max	Gma.13113.1.S1_at	CD391920	-	-	1e-10	At1g35460	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.19	5e-57	220	Hordeum vulgare	Contig15391_at	Contig15391	-	-	2e-9	At2g42280	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.12	8e-59	228	Oryza sativa	Os09g0487900	AK120902.1	-	Basic helix-loop-helix dimerisation region bHLHdomain containing protein	2e-11	At2g42280	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	2e-9	63	Populus trichocarpa	Ptp.1010.1.A1_at	CK090040	hypothetical protein	-	2e-8	At1g51140	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	1e-9	63	Triticum aestivum	Ta.30208.1.S1_at	CA607785	-	-	1e-9	At2g43140	DNA binding / transcription factor	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1611256_at	CD718630	-	-	3e-14	At4g13250	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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