Gene omics information

Query gene ID	Zm.11694.1.A1_at
Gene name	R2R3MYB-domain protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.11694.1.A1_at	CK369414	R2R3MYB-domain protein	-	2e-5	At3g12820	AtMYB10 (myb domain protein 10)	S.X.	H.G.	Please select
0.67	85.8	Zm.13919.1.A1_at	AF057523.1	hypoxically induced transcript 3	-	5e+0	At5g04210	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.55	71.6	Zm.470.1.A1_at	AF145755.1	THA4	-	2e+0	At5g28750	thylakoid assembly protein, putative	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.296.1.S1_at	AI670429	-	-	8e-1	At2g37950	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.48	61.3	Zm.5791.2.A1_at	AW438331	-	-	2e-2	At4g23570	SGT1A	S.X.	H.G.	Please select
0.46	58.4	Zm.13919.1.S1_at	AF057523.1	hypoxically induced transcript 3	-	5e+0	At5g04210	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.39	45.6	Zm.8097.1.A1_at	BM336868	-	-	2e+0	At3g21940	receptor protein kinase-related	S.X.	H.G.	Please select
0.32	33.4	Zm.5406.1.S1_at	BM337472	-	-	2e-6	At1g11240	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.7	99.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.3	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.5	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.0	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.8	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.1	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	0	876	Zm.11694.1.S1_at	CK369414	R2R3MYB-domain protein	-	3e-4	At3g23250	MYB15 (MYB DOMAIN PROTEIN 15)	C.G.	S.X.	Please select
0.18	1e-41	169	Zm.13884.1.S1_at	CO524780	hypothetical protein LOC100279722	-	5e-20	At4g38620	MYB4	C.G.	S.X.	Please select
0.37	3e-33	141	Zm.14527.1.A1_at	BI542536	R2R3MYB-domain protein	-	5e-15	At3g01140	MYB106 (myb domain protein 106)	C.G.	S.X.	Please select
0.31	3e-33	141	Zm.14527.1.S1_at	BI542536	hypothetical protein LOC100279555	-	5e-15	At3g01140	MYB106 (myb domain protein 106)	C.G.	S.X.	Please select
0.10	2e-25	115	Zm.13542.1.S1_at	AY108280.1	Transcription factor MYB31	-	4e-24	At4g38620	MYB4	C.G.	S.X.	Please select
0.15	5e-23	107	Zm.15854.1.S1_at	CK370725	-	-	4e-39	At4g38620	MYB4	C.G.	S.X.	Please select
0.07	7e-22	103	Zm.4412.1.S1_at	AI714727	MYB-like protein 1	-	4e-9	At4g22680	MYB85 (myb domain protein 85)	C.G.	S.X.	Please select
0.22	7e-22	103	Zm.14539.1.A1_at	AY108777.1	R2R3MYB-domain protein	-	7e-8	At3g12720	ATMYB67 (MYB DOMAIN PROTEIN 67)	C.G.	S.X.	Please select
0.16	7e-22	103	Zm.14539.1.S1_at	AY108777.1	-	-	7e-8	At3g12720	ATMYB67 (MYB DOMAIN PROTEIN 67)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-5	50	Arabidopsis thaliana	At3g12820	820464	AtMYB10 (myb domain protein 10)	Member of the R2R3 factor gene family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	1e-10	67	Glycine max	Gma.4207.3.S1_a_at	BE804803	MYB transcription factor MYB48	-	1e-52	At4g38620	MYB4	C.G.	S.X.	Please select
0.38	7e-87	319	Hordeum vulgare	Contig5842_s_at	Contig5842	-	-	8e-6	At3g12820	AtMYB10 (myb domain protein 10)	C.G.	S.X.	Please select
0.35	7e-81	301	Oryza sativa	Os02g0624300	AK112056.1	-	MYB1 protein	9e-6	At3g23250	MYB15 (MYB DOMAIN PROTEIN 15)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	1e-1	38	Populus trichocarpa	PtpAffx.224933.1.S1_at	pmrna43867	hypothetical protein	-	3e-18	At3g23250	MYB15 (MYB DOMAIN PROTEIN 15)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.45	9e-45	180	Triticum aestivum	TaAffx.51318.1.S1_at	CA727544	-	-	2e-5	At4g38620	MYB4	C.G.	S.X.	Please select
0.10	4e-7	54	Vitis vinifera	1619454_at	CF568815	-	-	1e-55	At4g38620	MYB4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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