Gene omics information

Query gene ID	Zm.11685.1.A1_at
Gene name	hypothetical protein LOC100194378
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.11685.1.A1_at	BM379931	hypothetical protein LOC100194378	-	3e-1	At1g72645	unknown protein	S.X.	H.G.	Please select
0.80	94.0	Zm.3642.1.A1_at	CA404841	hypothetical protein LOC100273944	-	1e-1	At1g63522	-	S.X.	H.G.	Please select
0.77	92.1	Zm.5314.1.A1_at	CF637974	transcription initiation factor IIF, alpha subunit	-	4e-11	At4g12610	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein	S.X.	H.G.	Please select
0.73	89.9	Zm.19149.1.S1_at	CO526376	hypothetical protein LOC100272365	-	2e-1	At3g44020	thylakoid lumenal P17.1 protein	S.X.	H.G.	Please select
0.71	88.2	ZmAffx.135.1.A1_at	AI667706	purine permease	-	3e+0	At2g43540	unknown protein	S.X.	H.G.	Please select
0.59	76.1	Zm.11811.1.S1_at	CF052353	glycosyltransferase 5 /// glycosyltransferase 5	-	3e-10	At3g62720	XT1 (XYLOSYLTRANSFERASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.6	99.1	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.9	98.6	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.6	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM206301	Upper pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.4	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM206319	Lower pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.3	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.9	97.7	GSM206328	Upper pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e+0	32	Zm.7056.4.A1_at	CD434927	-	-	8e-26	At2g06990	HEN2 (hua enhancer 2)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5290.1.S1_at	AY104548.1	F-box domain containing protein	-	4e+0	At3g07260	forkhead-associated domain-containing protein / FHA domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.14150.1.A1_at	AW231360	hypothetical protein LOC100194149	-	4e-1	At2g43280	far-red impaired responsive family protein / FAR1 family protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zm.9635.1.A1_at	BM334297	-	-	2e+1	At5g55940	emb2731 (embryo defective 2731)	C.G.	S.X.	Please select
0.03	7e+0	30	Zm.9635.1.A1_a_at	BM334297	-	-	2e+1	At5g55940	emb2731 (embryo defective 2731)	C.G.	S.X.	Please select
0.01	7e+0	30	Zm.8816.1.S1_at	CA404105	hypothetical protein LOC100191764	-	1e-24	At3g56310	alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative	C.G.	S.X.	Please select
0.01	7e+0	30	Zm.630.1.A1_at	AF127022.1	RNA polymerase2	-	1e-7	At2g24120	SCA3 (SCABRA 3)	C.G.	S.X.	Please select
0.01	7e+0	30	Zm.6139.2.A1_at	CF018619	methionyl-tRNA synthetase	-	1e-5	At2g40660	tRNA-binding region domain-containing protein	C.G.	S.X.	Please select
0.01	7e+0	30	Zm.4839.1.S1_at	AY103614.1	aldehyde dehydrogenase family 7 member A1	-	6e-33	At1g54100	ALDH7B4 (Aldehyde Dehydrogenase 7B4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	Arabidopsis thaliana	At1g72645	2745853	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	HgAffx.24076.1.S1_at	CB299339	-	-	8e-1	At5g59616	protein kinase-related	C.G.	S.X.	Please select
0.03	5e-1	34	Hordeum vulgare	HX13C19r_at	HX13C19r	-	-	3e+0	At5g35945	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os03g0173900	AK063978.1	-	Integrins alpha chain family protein	4e-2	At3g63530	BB (BIG BROTHER)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Populus trichocarpa	PtpAffx.219116.1.S1_at	pmrna34939	hypothetical protein	-	6e-1	At4g24940	SAE1A (SUMO-ACTIVATING ENZYME 1A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.39568.7.A1_at	CA667156	-	-	1e+1	At3g05727	-	C.G.	S.X.	Please select
0.04	3e-1	34	Vitis vinifera	1615932_at	CB978201	-	-	4e+0	At4g15417	ATRTL1 (ARABIDOPSIS THALIANA RNASEIII-LIKE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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