Gene omics information

Query gene ID	Zm.11663.1.A1_at
Gene name	hypothetical protein LOC100273622
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.11663.1.A1_at	CO531620	hypothetical protein LOC100273622	-	2e+0	At4g28170	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.13283.1.S1_at	CA826693	-	-	4e+0	At1g04778	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.1967.1.A1_at	BG836522	pathogenesis-related protein 10 /// pathogenesis-related protein 1	-	1e-23	At1g77180	chromatin protein family	S.X.	H.G.	Please select
0.61	79.5	Zm.11909.1.A1_at	BM381708	-	-	4e+0	At5g42146	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.1506.1.A1_at	X82184.1	defence-related protein	-	1e-1	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please select
0.44	55.7	Zm.9567.1.S1_at	BM378205	-	-	5e-10	At5g10780	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.1	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-1	36	Zm.5094.1.S1_at	AY104603.1	hypothetical protein LOC100280083	-	2e-100	At3g28715	H+-transporting two-sector ATPase, putative	C.G.	S.X.	Please select
0.03	6e-1	34	Zm.18407.1.A1_at	CO527487	-	-	1e+0	At5g39640	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.16996.1.S1_at	CF972572	-	-	3e-1	At3g24450	copper-binding family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.5542.1.S1_at	CO518213	Hypothetical protein LOC100193112	-	7e-4	At3g15140	exonuclease family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.5542.1.A1_at	AI622571	hypothetical protein LOC100193112	-	7e-4	At3g15140	exonuclease family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.4739.1.A1_at	AI665985	hypothetical protein LOC100278358	-	2e-1	At3g26010	F-box family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.388.1.A1_at	AF047852.1	terminal ear1	-	3e-7	At3g26120	TEL1 (TERMINAL EAR1-LIKE 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.338.1.A1_at	CF626535	somatic embryogenesis receptor-like kinase1	-	4e-34	At1g71830	SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.328.1.S1_at	U89496.1	liguleless1	-	2e-1	At1g56530	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At4g28170	828932	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e+0	32	Glycine max	PsAffx.C88000001_at	PsAffx.C88000001	-	-	9e-1	At3g56340	40S ribosomal protein S26 (RPS26C)	C.G.	S.X.	Please select
0.15	3e-15	81	Hordeum vulgare	Contig16955_at	Contig16955	-	-	1e-1	At5g06160	ATO (ATROPOS)	C.G.	S.X.	Please select
0.03	7e-1	36	Oryza sativa	Os09g0369500	AK105479.1	-	Conserved hypothetical protein	7e-1	At3g06180	structural constituent of ribosome	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	8e+0	32	Populus trichocarpa	PtpAffx.208389.1.S1_at	pmrna16684	hypothetical protein	-	7e-1	At3g22580	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.23324.1.S1_at	CA734531	-	-	3e+0	At5g43940	HOT5 (sensitive to hot temperatures 5)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1611363_at	CB969469	hypothetical protein LOC100248617	-	1e-18	At2g21370	xylulose kinase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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