CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.11653.1.A1_at

Gene name hypothetical protein LOC100191865

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 69.1 Zm.11653.1.A1_at CF243979 hypothetical protein LOC100191865 - 6e+0 At3g07460 unknown protein S.X. H.G.
0.83 95.6 Zm.16508.1.S1_x_at BE510313 ribosomal protein L39 - 4e-13 At4g31985 60S ribosomal protein L39 (RPL39C) S.X. H.G.
0.80 94.0 Zm.10261.1.A1_at BM501576 - - 4e-20 At5g62410 SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) S.X. H.G.
0.77 92.1 Zm.9526.1.A1_at AY110244.1 long-chain-fatty-acid-CoA ligase-like protein - 2e-3 At3g16170 acyl-activating enzyme 13 (AAE13) S.X. H.G.
0.77 92.1 Zm.8357.1.A1_at BM267266 - - 1e-4 At3g62020 GLP10 (GERMIN-LIKE PROTEIN 10) S.X. H.G.
0.67 85.8 Zm.16779.1.A1_at CF626512 hypothetical protein LOC100216924 - 2e-3 At5g48810 CB5-D (CYTOCHROME B5 ISOFORM D) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.1 98.2 GSM320439 protocol: mRNA - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9 98.2 GSM206301 Upper pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
8.4 98.1 GSM320438 protocol: mRNA - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1 98.0 GSM320444 protocol: mRNA - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0 98.0 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.9 97.9 GSM320445 protocol: mRNA - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7 97.6 GSM206313 Upper pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.0 97.3 GSM206328 Upper pulvinus 60 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.8 97.2 GSM320441 protocol: mRNA - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7 97.2 GSM320440 protocol: mRNA - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-2 38 Zm.10591.1.S1_at BQ479053 hypothetical protein LOC100194290 - 3e-22 At3g58140 phenylalanyl-tRNA synthetase class IIc family protein C.G. S.X.
0.04 2e-1 36 Zm.15964.1.A1_at CF244578 hypothetical protein LOC100277470 - 1e+0 At5g26040 HDA2 C.G. S.X.
0.04 2e-1 36 Zm.12381.2.S1_x_at CF637259 - - 2e-1 At1g11270 F-box family protein C.G. S.X.
0.04 2e-1 36 Zm.12381.2.S1_at CF637259 - - 2e-1 At1g11270 F-box family protein C.G. S.X.
0.01 2e-1 36 Zm.12248.1.S1_at BM338038 Hypothetical protein LOC100216999 - 4e+0 At3g59870 unknown protein C.G. S.X.
0.01 6e-1 34 Zm.9963.1.S1_at AI737691 - - 4e-68 At5g49910 CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2) C.G. S.X.
0.01 6e-1 34 Zm.4131.1.A1_at AI855072 - - 1e+0 At4g20325 unknown protein C.G. S.X.
0.02 6e-1 34 Zm.3316.1.A1_at CF002679 ribosome-like protein - 2e+0 At4g29930 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 6e-1 34 Zm.18352.1.S1_at CO527044 glucan endo-1,3-beta-glucosidase, acidic isoform - 1e+1 At5g62470 MYB96 (myb domain protein 96) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e+0 32 Arabidopsis thaliana At3g07460 819934 unknown protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;PO - - - C.G. S.X.
0.04 2e+0 34 Glycine max PsAffx.psZS004xK19f_at PsAffx.psZS004xK19f - - 1e+1 At5g65480 unknown protein C.G. S.X.
0.03 7e-1 34 Hordeum vulgare HVSMEa0011M12r2_at HVSMEa0011M12r2 - - 4e+0 At5g44210 ERF9 (ERF DOMAIN PROTEIN 9) C.G. S.X.
0.03 7e-1 36 Oryza sativa Os12g0565375 9640.m03672 - - 1e+1 At4g13600 - C.G. S.X.
0.02 8e+0 32 Populus trichocarpa PtpAffx.88808.1.A1_at CV251825 - - 5e+0 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) C.G. S.X.
0.03 4e-1 36 Triticum aestivum Ta.20377.1.S1_at CA679261 - - 7e-2 At4g27960 UBC9 (UBIQUITIN CONJUGATING ENZYME 9) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1620252_at CF568862 - - 4e-6 At5g48730 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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