CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.11636.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 92.1 Zm.11636.1.A1_at BM379473 - - 4e+0 At5g07160 DNA binding / transcription factor S.X. H.G.
0.77 92.1 Zm.9311.1.A1_a_at BG842505 hypothetical protein LOC100274965 - 5e+0 At2g29180 unknown protein S.X. H.G.
0.55 71.6 Zm.17968.1.A1_at CK827143 - - 2e+0 At5g02960 40S ribosomal protein S23 (RPS23B) S.X. H.G.
0.50 65.7 Zm.13185.1.A1_at AY104045.1 - - 1e-22 At3g13060 - S.X. H.G.
0.50 65.7 Zm.7541.1.A1_at BM341407 hypothetical protein LOC100192095 - 6e+0 At3g43110 unknown protein S.X. H.G.
0.50 65.7 Zm.7938.1.A1_at BM079591 glycosyltransferase - 7e+0 At5g42567 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.6 99.4 GSM206314 Upper pulvinus 15 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
21.5 99.4 GSM206332 Lower pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
18.9 99.2 GSM206326 Upper pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
15.4 99.0 GSM206320 Lower pulvinus 15 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
14.1 98.8 GSM206308 Lower pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
12.8 98.7 GSM206302 Upper pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
11.3 98.5 GSM206303 Upper pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
9.8 98.3 GSM206290 Upper pulvinus 15 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
8.2 98.0 GSM206296 Lower pulvinus 15 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.1 97.7 GSM206309 Lower pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 5e-4 44 Zm.17071.1.S1_at CF974775 hypothetical protein LOC100277116 - 4e+0 At1g01250 AP2 domain-containing transcription factor, putative C.G. S.X.
0.03 3e-2 38 Zm.11178.1.A1_at AI745736 - - 5e-1 At5g28490 LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) C.G. S.X.
0.03 1e-1 36 Zm.3114.1.A1_at CK827106 low-molecular-weight cysteine-rich protein LCR70 - 6e+0 At5g01300 phosphatidylethanolamine-binding family protein C.G. S.X.
0.04 1e-1 36 Zm.10665.1.A1_at BQ538910 - - 1e+1 At5g03455 CDC25 C.G. S.X.
0.03 5e-1 34 Zm.6399.1.A1_at CF630978 hypothetical protein LOC100277208 - 9e-2 At2g38646 unknown protein C.G. S.X.
0.02 5e-1 34 Zm.5882.1.A1_at AI637237 - - 2e-1 At1g52880 NAM (NO APICAL MERISTEM) C.G. S.X.
0.03 5e-1 34 Zm.18775.1.A1_at BM074499 calcium/calmodulin dependent protein kinase-like - 2e+0 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein C.G. S.X.
0.01 5e-1 34 Zm.17271.1.A1_a_at CF629105 hypothetical protein LOC100191540 - 6e-18 At5g52650 40S ribosomal protein S10 (RPS10C) C.G. S.X.
0.02 5e-1 34 Zm.13611.1.S1_at AW171965 - - 6e-23 At5g13520 peptidase M1 family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 32 Arabidopsis thaliana At5g07160 830607 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMO - - - C.G. S.X.
0.03 4e-1 36 Glycine max PsAffx.C160000011_at PsAffx.C160000011 - - 1e+0 At5g40190 calmodulin-binding protein C.G. S.X.
0.05 1e-1 36 Hordeum vulgare Contig4772_s_at Contig4772 - - 9e-1 At5g05230 ubiquitin-protein ligase C.G. S.X.
0.16 4e-20 99 Oryza sativa Os03g0822400 AK070075.1 - Conserved hypothetical protein 1e+0 At1g14730 - C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.220300.1.S1_at pmrna36670 hypothetical protein - 3e+0 At4g05490 F-box family protein (FBL22) C.G. S.X.
0.04 3e-1 36 Triticum aestivum TaAffx.70666.1.S1_at BQ802043 - - 3e+0 At3g49870 ATARLA1C (ADP-ribosylation factor-like A1C) C.G. S.X.
0.04 5e+0 30 Vitis vinifera 1611467_at CF373105 hypothetical protein LOC100255707 - 6e-2 At4g10310 HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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