Gene omics information

Query gene ID	Zm.11612.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.11612.1.A1_at	CF634224	-	-	3e-1	At1g06135	unknown protein	S.X.	H.G.	Please select
0.63	81.1	Zm.4513.1.A1_at	CA405232	-	-	3e+0	At2g41280	M10	S.X.	H.G.	Please select
0.56	74.4	Zm.17520.1.A1_a_at	CF633076	-	-	3e-2	At1g29120	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.9826.1.A1_at	BM332738	-	-	1e+0	At3g28680	prolylcarboxypeptidase-related	S.X.	H.G.	Please select
0.47	59.9	Zm.17717.1.A1_at	CK370123	-	-	4e-1	At1g05170	galactosyltransferase family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.3726.1.A1_at	AY105990.1	hypothetical protein LOC100274504	-	2e-1	At1g05850	POM1 (POM-POM1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.1	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
20.0	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM375794	Deep-sowing 10d treatment UCZ, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-5	48	Zm.12369.1.S1_at	AY107124.1	-	-	2e+1	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.4792.1.S1_at	CO524397	hypothetical protein LOC100216840	-	3e-1	At1g53910	RAP2.12	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.13005.1.S1_at	CD443746	calmodulin-like protein 1	-	1e-1	At5g52960	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.992.1.A1_at	AY111215.1	hypothetical protein LOC100279091	-	6e-2	At4g01100	ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.7091.2.A1_at	AY103838.1	Chlorophyll a/b-binding apoprotein CP24 precursor	-	2e-15	At1g15820	LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.7091.1.A1_at	U23190.1	Chlorophyll a/b-binding apoprotein CP24 precursor	-	3e-15	At1g15820	LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.7091.1.A1_x_at	U23190.1	chlorophyll a/b-binding apoprotein CP24 precursor	-	3e-15	At1g15820	LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.7091.2.S1_a_at	AY103838.1	chlorophyll a/b-binding apoprotein CP24 precursor	-	2e-15	At1g15820	LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.17163.1.A1_at	BM378304	-	-	1e+0	At2g24870	self-incompatibility protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	Arabidopsis thaliana	At1g06135	2745743	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	PsAffx.psMY008iB06r_at	PsAffx.psMY008iB06r	-	-	1e+0	At5g07230	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.03	4e-2	38	Hordeum vulgare	HVSMEh0088I08r2_s_at	HVSMEh0088I08r2	-	-	4e+0	At5g10320	unknown protein	C.G.	S.X.	Please select
0.28	8e-10	65	Oryza sativa	Os06g0725100	AK110292.1	-	Lipolytic enzyme, G-D-S-L family protein	3e+0	At1g20140	ASK4 (ARABIDOPSIS SKP1-LIKE 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Populus trichocarpa	PtpAffx.220593.1.S1_at	pmrna36998	hypothetical protein	-	2e+1	At3g42475	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	4e-7	56	Triticum aestivum	TaAffx.43554.1.S1_at	AJ613197	-	-	6e+0	At1g21970	LEC1 (LEAFY COTYLEDON 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1618026_at	CF512100	-	-	4e+0	At5g46670	CHP-rich zinc finger protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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