Gene omics information

Query gene ID	Zm.11611.1.A1_at
Gene name	hypothetical protein LOC100192942
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.11611.1.A1_at	BM379298	hypothetical protein LOC100192942	-	5e+0	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	S.X.	H.G.	Please select
0.71	88.2	Zm.11338.1.A1_at	BM349130	hypothetical protein LOC100274516	-	3e-6	At2g40190	glycosyl transferase family 1 protein	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.732.1.A1_at	AI740043	-	-	5e+0	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.531.1.A1_at	AI711719	-	-	8e-1	At5g20370	serine-rich protein-related	S.X.	H.G.	Please select
0.33	36.0	Zm.5070.1.A1_at	AY108736.1	hypothetical protein LOC100193023	-	2e-16	At1g22950	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	S.X.	H.G.	Please select
0.23	18.6	Zm.18815.1.A1_at	CO527279	hypothetical protein LOC100191886	-	2e+0	At4g12530	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.1	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM375795	Deep-sowing 10d treatment Control, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
8.4	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
6.9	97.7	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	34	Zm.9404.1.A1_at	BM348989	immature colon carcinoma transcript 1 protein	-	2e-9	At1g62850	-	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.18984.1.A1_at	CO518220	hypothetical protein LOC100279220	-	2e+0	At3g13140	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.11729.1.A1_at	CF635461	hypothetical protein LOC100273566	-	2e-19	At2g22230	beta-hydroxyacyl-ACP dehydratase, putative	C.G.	S.X.	Please select
0.04	2e+0	32	ZmAffx.352.1.A1_x_at	AI670499	-	-	3e+0	At2g01505	CLE16 (CLAVATA3/ESR-RELATED 16)	C.G.	S.X.	Please select
0.04	2e+0	32	ZmAffx.352.1.S1_at	AI670499	-	-	3e+0	At2g01505	CLE16 (CLAVATA3/ESR-RELATED 16)	C.G.	S.X.	Please select
0.04	2e+0	32	ZmAffx.352.1.S1_x_at	AI670499	-	-	3e+0	At2g01505	CLE16 (CLAVATA3/ESR-RELATED 16)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5145.1.S1_at	AY104006.1	6,7-dimethyl-8-ribityllumazine synthase	-	5e-7	At2g44050	COS1 (COI1 SUPPRESSOR1)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.3456.1.A1_at	CF629528	N-acetyltransferase	-	1e-5	At2g39000	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.19062.1.S1_at	CO531568	glycine-rich RNA-binding protein 2	-	6e+0	At5g51040	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At1g07400	837252	17.8 kDa class I heat shock protein (HSP17.8-CI)	F:unknown;P:response to oxidative stress, response to heat;C:unknown;BPOFAM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e+0	32	Glycine max	PsAffx.CL697Contig1_at	PsAffx.CL697Contig1	-	-	7e+0	At5g56020	-	C.G.	S.X.	Please select
0.04	6e-1	34	Hordeum vulgare	HR01C24r_at	HR01C24r	-	-	1e+1	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	C.G.	S.X.	Please select
0.07	4e-5	50	Oryza sativa	Os01g0905300	AK070609.1	-	Hypothetical protein	4e+0	At5g47630	mtACP3 (mitochondrial acyl carrier protein 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	PtpAffx.220222.1.S1_at	pmrna36579	hypothetical protein	-	4e+0	At1g26340	CB5-A (CYTOCHROME B5 ISOFORM A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.87282.1.S1_at	CA593039	-	-	2e+0	At4g17440	unknown protein	C.G.	S.X.	Please select
0.04	6e+0	30	Vitis vinifera	1619130_x_at	AY427145.1	-	-	4e+0	At3g28170	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage