Gene omics information

Query gene ID	Zm.11605.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.11605.1.A1_at	BM379262	-	-	4e+0	At4g11930	unknown protein	S.X.	H.G.	Please select
0.71	88.2	Zm.4385.1.S1_at	BQ487047	small nuclear ribonucleoprotein-associated protein B	-	3e-15	At5g44500	small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative	S.X.	H.G.	Please select
0.67	85.8	Zm.3699.5.A1_at	AY107222.1	-	-	3e-2	At5g09995	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.3633.2.S1_x_at	CF634876	APx1 - Cytosolic Ascorbate Peroxidase	-	3e-28	At1g07890	APX1 (ascorbate peroxidase 1)	S.X.	H.G.	Please select
0.60	77.8	Zm.4132.1.A1_at	CO529833	hypothetical protein LOC100276765	-	4e-14	At1g16520	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.8233.1.A1_at	AI947630	-	-	1e-2	At4g31580	SRZ-22	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.9	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.8	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.9	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-28	125	Zm.17858.1.A1_at	AY111541.1	hypothetical protein AY111541	-	2e+0	At3g53620	AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4)	C.G.	S.X.	Please select
0.09	1e-28	125	Zm.17858.1.S1_at	AY111541.1	hypothetical protein AY111541	-	2e+0	At3g53620	AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4)	C.G.	S.X.	Please select
0.04	2e-3	42	Zm.8547.1.A1_at	BM338859	-	-	5e+0	At3g09380	-	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.18939.1.A1_at	CF631171	-	-	3e+0	At5g26622	beta-galactosidase	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.14979.1.S1_at	AW424437	protein yippee-like	-	5e-1	At4g27745	-	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.18119.1.A1_at	CN844952	-	-	9e-2	At5g41090	anac095 (Arabidopsis NAC domain containing protein 95)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.16826.1.A1_at	CF752095	-	-	2e+0	At4g01420	CBL5 (CALCINEURIN B-LIKE PROTEIN 5)	C.G.	S.X.	Please select
0.04	6e+0	30	ZmAffx.997.1.S1_at	AI857164	-	-	3e+0	At5g25990	unknown protein	C.G.	S.X.	Please select
0.04	6e+0	30	ZmAffx.997.1.A1_at	AI857164	-	-	3e+0	At5g25990	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At4g11930	826800	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-2	40	Glycine max	PsAffx.C172000022_at	PsAffx.C172000022	-	-	2e-2	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	C.G.	S.X.	Please select
0.04	1e-1	36	Hordeum vulgare	Contig23176_at	Contig23176	-	-	9e-1	At1g16430	surfeit locus protein 5 family protein / SURF5 family protein	C.G.	S.X.	Please select
0.07	5e-4	46	Oryza sativa	Os11g0444500	9639.m02279	-	-	1e+1	At5g57450	XRCC3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.223294.1.S1_at	pmrna41219	hypothetical protein	-	2e+0	At1g21620	APUM20 (Arabidopsis Pumilio 20)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	2e-1	36	Triticum aestivum	TaAffx.65524.1.S1_at	CA727646	-	-	3e-1	At1g65420	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1620594_at	CB341441	-	-	1e+1	Atmg00990	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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