Gene omics information

Query gene ID	Zm.11586.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.11586.1.A1_at	BM379136	-	-	6e+0	Atmg00280	-	S.X.	H.G.	Please select
0.67	85.8	Zm.13456.2.A1_at	AY111230.1	Hypothetical protein LOC100194201	-	5e+0	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.533.1.S1_at	AI711769	-	-	8e-1	At5g11790	Ndr family protein	S.X.	H.G.	Please select
0.60	77.8	Zm.17625.1.A1_at	CF631845	-	-	4e-23	At1g10200	WLIM1	S.X.	H.G.	Please select
0.50	65.7	Zm.10593.1.A1_at	BM380000	hypothetical protein LOC100194168	-	1e+0	At3g55350	unknown protein	S.X.	H.G.	Please select
0.47	59.9	Zm.3964.1.A1_a_at	AF205603.1	ferric-chelate reductase (NADH)2	-	1e-17	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.4	99.3	GSM206330	Lower pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
19.9	99.3	GSM206324	Upper pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
17.0	99.1	GSM206323	Left pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
16.9	99.1	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
14.7	98.9	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
14.5	98.9	GSM206311	Left pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.8	98.6	GSM206333	Lower pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.3	98.5	GSM206312	Upper pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.6	98.3	GSM206327	Upper pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.5	98.3	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-2	38	Zm.13283.1.S1_at	CA826693	-	-	4e+0	At1g04778	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	30	Zm.9089.1.A1_at	BM332138	-	-	5e+0	At5g39340	AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3)	C.G.	S.X.	Please select
0.02	3e+0	30	Zm.8162.1.A1_at	CF037963	-	-	3e-3	At1g22050	MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR)	C.G.	S.X.	Please select
0.01	3e+0	30	Zm.5102.1.S1_at	AI600843	hypothetical protein LOC100273584	-	9e-11	At5g08020	RPA70B (RPA70-KDA SUBUNIT B)	C.G.	S.X.	Please select
0.05	1e+1	28	Zm.9832.1.A1_at	BM340381	hypothetical protein LOC100279963	-	4e+0	At5g65166	unknown protein	C.G.	S.X.	Please select
0.01	1e+1	28	Zm.9664.1.A1_at	AY108354.1	hypothetical protein LOC100275089	-	2e-2	At4g24690	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	C.G.	S.X.	Please select
0.01	1e+1	28	Zm.9754.1.A1_at	AJ606942.1	cytokinin oxidase 2	-	8e-11	At3g63440	CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)	C.G.	S.X.	Please select
0.02	1e+1	28	Zm.6597.1.A1_at	AY106822.1	hypothetical protein LOC100279221	-	8e-9	At2g20050	ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase	C.G.	S.X.	Please select
0.01	1e+1	28	Zm.655.1.A1_at	AF318580.1	Glk1 protein	-	1e-6	At5g44190	GLK2 (GOLDEN2-LIKE 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	6e+0	30	Arabidopsis thaliana	Atmg00280	-	-	hypothetical protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e+0	32	Glycine max	Gma.17696.1.S1_at	BE804617	-	-	3e+0	At3g18460	unknown protein	C.G.	S.X.	Please select
0.05	3e+0	30	Hordeum vulgare	S0001000055C04F1_x_at	S0001000055C04F1	-	-	3e+0	At5g21950	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.05	7e-1	34	Oryza sativa	Os.20171.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-1	34	Populus trichocarpa	Ptp.601.1.A1_at	CK089269	-	-	1e-10	At3g18780	ACT2 (ACTIN 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-3	42	Triticum aestivum	Ta.26632.1.A1_at	CD491419	-	-	3e-1	At4g09120	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.08	2e+0	30	Vitis vinifera	1608142_at	CD801508	similar to tatD-related deoxyribonuclease family protein	-	2e+0	At1g26690	emp24/gp25L/p24 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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