Gene omics information

Query gene ID	Zm.11547.1.S1_at
Gene name	hypothetical protein LOC100276375
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	55.7	Zm.11547.1.S1_at	CA827895	hypothetical protein LOC100276375	-	1e+1	At5g41520	40S ribosomal protein S10 (RPS10B)	S.X.	H.G.	Please select
0.78	92.5	Zm.9290.1.A1_at	AY108360.1	hypothetical protein LOC100192546	-	7e-1	At5g58260	-	S.X.	H.G.	Please select
0.74	90.3	Zm.14792.1.A1_at	AI666236	-	-	4e+0	At3g62340	WRKY68	S.X.	H.G.	Please select
0.67	85.8	Zm.6228.1.A1_at	AI739920	-	-	1e+0	At1g64370	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.17724.1.S1_a_at	CF623515	hypothetical protein LOC100278419	-	1e+0	At3g56240	CCH (COPPER CHAPERONE)	S.X.	H.G.	Please select
0.60	77.8	Zm.18278.1.S1_at	CK371368	-	-	1e-26	At3g52200	LTA3	S.X.	H.G.	Please select
0.50	65.7	Zm.13417.1.A1_at	CA400681	hypothetical protein LOC100193979	-	4e-1	At3g05830	-	S.X.	H.G.	Please select
0.50	65.7	Zm.12433.1.S1_s_at	AY105016.1	tyrosyl-tRNA synthetase	-	4e-18	At2g33840	tRNA synthetase class I (W and Y) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.1	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.8	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.1	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.0	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-3	42	Zm.9414.1.A1_at	BM337964	-	-	1e+0	At2g46320	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.367.1.S1_at	D26563.1	low temperature-induced protein15	-	2e-4	At1g75388	CPuORF5 (Conserved peptide upstream open reading frame 5)	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.16488.1.A1_at	CD440410	hypothetical protein LOC100277264 /// hypothetical protein LOC100280361 /// nonspecific lipid-transfer protein 4	-	7e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.14689.1.S1_at	BM341363	hypothetical protein LOC100277287	-	7e-7	At2g43180	catalytic	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.3682.1.A1_at	BG874096	-	-	1e+0	At3g06590	transcription factor	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.3787.1.A1_at	BM381328	purple acid phosphatase	-	2e-5	At3g20500	PAP18 (PURPLE ACID PHOSPHATASE 18)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.16524.4.A1_at	AY107003.1	-	-	4e-1	At2g40380	PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.16524.4.S1_at	AY107003.1	-	-	4e-1	At2g40380	PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.12726.1.S1_at	BE512039	ADP-glucose pyrophosphorylase	-	2e-8	At1g27680	APL2 (ADPGLC-PPASE LARGE SUBUNIT)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+1	30	Arabidopsis thaliana	At5g41520	834154	40S ribosomal protein S10 (RPS10B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast;MPBOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.CL2314Contig1_at	PsAffx.CL2314Contig1	-	-	5e+0	At4g16750	DRE-binding transcription factor, putative	C.G.	S.X.	Please select
0.10	2e-3	42	Hordeum vulgare	Contig20034_at	Contig20034	-	-	1e+0	At4g18070	unknown protein	C.G.	S.X.	Please select
0.32	2e-74	280	Oryza sativa	Os11g0463700	AK065785.1	-	Conserved hypothetical protein	4e-1	At5g14000	anac084 (Arabidopsis NAC domain containing protein 84)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.207533.1.S1_at	pmrna14950	hypothetical protein	-	8e-1	At5g38940	manganese ion binding / nutrient reservoir	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	7e-8	57	Triticum aestivum	Ta.1926.1.S1_x_at	AJ615578	-	-	1e+0	At4g34170	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1612811_at	CF373161	hypothetical protein LOC100246436	-	1e+0	At1g76190	auxin-responsive family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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