Gene omics information

Query gene ID	Zm.1140.1.S1_at
Gene name	hypothetical protein LOC100279272
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.1140.1.S1_at	BM073428	hypothetical protein LOC100279272	-	4e-14	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	S.X.	H.G.	Please select
0.73	89.9	Zm.3132.1.A1_at	BE512386	hypothetical protein LOC100273996	-	1e-7	At3g02510	regulator of chromosome condensation (RCC1) family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.18381.1.A1_s_at	CO523274	Hypothetical protein LOC100216796	-	4e-1	At3g03720	CAT4 (CATIONIC AMINO ACID TRANSPORTER 4)	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.1187.1.A1_at	BE012211	-	-	3e+0	At4g29033	-	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.160.1.A1_at	AI668152	-	-	8e-1	At4g24380	unknown protein	S.X.	H.G.	Please select
0.06	2.3	Zm.782.1.A1_at	CA404412	hypothetical protein LOC100273031	-	4e-30	At2g27680	aldo/keto reductase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.6	98.4	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.0	98.4	GSM206306	Lower pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.9	98.3	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.6	98.3	GSM206300	Upper pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.9	98.2	GSM206299	Left pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.7	97.9	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.2	97.8	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.5	97.5	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.0	97.3	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.7	97.2	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-11	69	Zm.19324.1.A1_at	CK986141	hypothetical protein LOC100279823	-	6e-3	At3g13065	SRF4 (STRUBBELIG-RECEPTOR FAMILY 4)	C.G.	S.X.	Please select
0.04	6e-11	67	Zm.8505.1.A1_at	AY107567.1	-	-	1e-4	At1g51870	protein kinase family protein	C.G.	S.X.	Please select
0.11	6e-11	67	Zm.11950.1.A1_at	CF632814	-	-	2e-6	At3g19700	IKU2 (HAIKU2)	C.G.	S.X.	Please select
0.05	3e-10	65	Zm.9130.1.A1_at	BM268570	-	-	7e-2	At3g62220	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.06	3e-10	65	Zm.12324.1.A1_at	BQ703347	-	-	3e-1	At2g28330	unknown protein	C.G.	S.X.	Please select
0.02	1e-9	63	Zm.5300.1.A1_at	AI734564	-	-	5e-9	At5g01020	protein kinase family protein	C.G.	S.X.	Please select
0.13	1e-9	63	Zm.2907.1.A1_at	AW091196	-	-	2e+0	At3g48680	GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2)	C.G.	S.X.	Please select
0.03	1e-9	63	Zm.19143.1.A1_at	CF626055	-	-	1e-11	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.04	1e-9	63	Zm.16562.1.S1_at	CO530845	-	-	6e-3	At2g17220	protein kinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	4e-14	79	Arabidopsis thaliana	At3g49670	824129	BAM2 (BARELY ANY MERISTEM 2)	Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-5	52	Glycine max	GmaAffx.92535.1.S1_at	CF808260	-	-	6e-2	At1g26970	protein kinase, putative	C.G.	S.X.	Please select
0.56	0	759	Hordeum vulgare	Contig10767_at	Contig10767	-	-	3e-15	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	C.G.	S.X.	Please select
0.28	0	888	Oryza sativa	Os03g0228800	AK121286.1	-	Protein kinase domain containing protein	3e-17	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	3e-6	54	Populus trichocarpa	PtpAffx.64361.1.S1_s_at	CV228112	hypothetical protein	-	5e-63	At5g65700	BAM1 (BARELY ANY MERISTEM 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	2e-145	515	Triticum aestivum	TaAffx.58629.1.S1_at	CA617884	-	-	3e-1	At2g13550	unknown protein	C.G.	S.X.	Please select
0.17	1e-35	149	Vitis vinifera	1616189_at	CF511570	hypothetical protein LOC100260741	-	6e-18	At1g75820	CLV1 (CLAVATA 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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