Gene omics information

Query gene ID	Zm.11338.1.A1_at
Gene name	hypothetical protein LOC100274516
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.11338.1.A1_at	BM349130	hypothetical protein LOC100274516	-	3e-6	At2g40190	glycosyl transferase family 1 protein	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.732.1.A1_at	AI740043	-	-	5e+0	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	S.X.	H.G.	Please select
0.61	79.5	ZmAffx.531.1.A1_at	AI711719	-	-	8e-1	At5g20370	serine-rich protein-related	S.X.	H.G.	Please select
0.60	77.8	Zm.11611.1.A1_at	BM379298	hypothetical protein LOC100192942	-	5e+0	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	S.X.	H.G.	Please select
0.44	55.7	Zm.5070.1.A1_at	AY108736.1	hypothetical protein LOC100193023	-	2e-16	At1g22950	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	S.X.	H.G.	Please select
0.42	51.3	Zm.18038.1.S1_at	CD219308	-	-	2e+1	At5g66700	HB53	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.2	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.2	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.8	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.1	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.2	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	36	Zm.2748.1.S1_at	BU093107	hypothetical protein LOC100216589	-	2e-3	At1g07840	leucine zipper factor-related	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.8992.1.S1_at	AY103691.1	glyceraldehyde-3-phosphate dehydrogenase, cytosolic	-	5e-58	At1g79530	GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.609.1.S1_at	AF326497.1	small basic membrane intrinsic protein1a	-	9e+0	At5g63270	nitrate-responsive NOI protein, putative	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.4944.1.S1_at	AF272752.1	kinesin-like protein4	-	1e-10	At2g36200	kinesin motor protein-related	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.2191.1.A1_at	BF727733	-	-	2e+0	At2g18490	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.17207.1.A1_at	CK370357	hypothetical protein LOC100192477	-	1e-4	At5g14850	mannosyltransferase, putative	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.15420.1.S1_at	CD448505	-	-	6e+0	At5g09520	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.14732.1.S1_at	CB250091	hypothetical protein LOC100192107	-	4e-12	At3g22290	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.10184.1.A1_at	AY105003.1	hypothetical protein LOC100191375	-	2e-16	At1g65260	PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-6	54	Arabidopsis thaliana	At2g40190	818610	glycosyl transferase family 1 protein	F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;OMBFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	2e-5	52	Glycine max	GmaAffx.25868.1.A1_s_at	BU545147	-	-	3e-13	At2g40190	glycosyl transferase family 1 protein	C.G.	S.X.	Please select
0.22	1e-40	167	Hordeum vulgare	Contig23608_at	Contig23608	-	-	8e-8	At2g40190	glycosyl transferase family 1 protein	C.G.	S.X.	Please select
0.57	0	640	Oryza sativa	Os12g0583000	AK110753.1	-	-	4e-11	At2g40190	glycosyl transferase family 1 protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	9e-4	46	Populus trichocarpa	PtpAffx.210637.1.S1_at	pmrna20865	hypothetical protein	-	1e-17	At2g40190	glycosyl transferase family 1 protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	0	696	Triticum aestivum	TaAffx.58634.1.S1_at	CA617716	-	-	1e+0	At4g32450	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1615698_at	BQ792803	-	-	3e+0	At1g17350	auxin-induced-related / indole-3-acetic acid induced-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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