CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.11269.1.A1_at

Gene name EF hand family protein

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 79.5 Zm.11269.1.A1_at CK347607 EF hand family protein - 6e+0 At2g22460 unknown protein S.X. H.G.
0.50 65.7 Zm.3896.1.S1_at CD995552 penicillin-binding protein 2 - 9e-1 At3g06180 structural constituent of ribosome S.X. H.G.
0.50 65.7 Zm.10659.1.A1_at BQ538878 hypothetical protein LOC100191609 - 5e-2 At5g27440 unknown protein S.X. H.G.
0.44 55.7 Zm.11259.1.A1_at AI966828 m19 protein - 1e-2 At4g18960 AG (AGAMOUS) S.X. H.G.
0.40 48.5 Zm.12248.2.S1_at CO525571 hypothetical protein LOC100216999 - 1e+1 At5g44568 unknown protein S.X. H.G.
0.21 15.5 Zm.1584.1.A1_at CO524456 hypothetical protein LOC100273018 - 1e-10 At4g28706 pfkB-type carbohydrate kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.4 97.5 GSM206310 Lower pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.8 97.2 GSM206304 Upper pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.6 97.1 GSM205431 Mo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
5.6 97.1 GSM205424 Mo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
5.4 97.0 GSM206298 Lower pulvinus 60 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.3 96.9 GSM206300 Upper pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.3 96.9 GSM206292 Upper pulvinus 60 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.0 96.7 GSM206293 Right pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.8 96.6 GSM206306 Lower pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.6 96.4 GSM205420 Mo17 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.92 0 1471 Zm.11269.1.S1_at BM347540 - - 6e+0 At2g22460 unknown protein C.G. S.X.
0.02 4e-2 38 Zm.3263.1.A1_at BG842806 nudix hydrolase 13 - 2e+0 At3g52525 OFP6 (OVATE FAMILY PROTEIN 6) C.G. S.X.
0.01 2e-1 36 Zm.12733.1.S1_at CA404192 hypothetical protein LOC100280147 - 2e-23 At2g47940 DEGP2 C.G. S.X.
0.01 7e-1 34 Zm.8141.1.A1_at AY108955.1 hypothetical protein LOC100191434 - 4e+0 At4g35985 senescence/dehydration-associated protein-related C.G. S.X.
0.01 7e-1 34 Zm.6787.1.A1_at AF277454.1 UMP synthase - 2e-17 At3g54470 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) C.G. S.X.
0.01 7e-1 34 Zm.6787.1.A1_a_at AF277454.1 hypothetical protein LOC100274407 /// UMP synthase - 2e-17 At3g54470 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) C.G. S.X.
0.03 7e-1 34 Zm.5539.1.A1_at BG842565 hypothetical protein LOC100276652 - 5e+0 At5g03090 unknown protein C.G. S.X.
0.01 7e-1 34 Zm.2782.1.S1_at AW067310 - - 1e-79 At3g62830 AUD1 C.G. S.X.
0.01 7e-1 34 Zm.17999.1.A1_at AY105553.1 adenylate kinase - 3e-3 At2g39270 adenylate kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e+0 32 Arabidopsis thaliana At2g22460 816778 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.02 2e+0 34 Glycine max PsAffx.CL2548Contig1_at PsAffx.CL2548Contig1 - - 8e-2 At5g63740 zinc finger protein-related C.G. S.X.
0.49 3e-117 420 Hordeum vulgare Contig6691_at Contig6691 - - 2e+0 At5g61590 AP2 domain-containing transcription factor family protein C.G. S.X.
0.55 9e-155 547 Oryza sativa Os04g0601400 AK069777.1 - Calcium-binding EF-hand domain containing protein 1e-1 At3g56190 ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) C.G. S.X.
0.03 9e+0 32 Populus trichocarpa PtpAffx.223699.1.S1_at pmrna41833 hypothetical protein - 3e+0 At1g76980 - C.G. S.X.
0.71 0 833 Triticum aestivum TaAffx.8370.1.S1_at CA626566 - - 4e+0 At2g22460 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1610294_at CF373126 - - 4e-13 At4g25835 AAA-type ATPase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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