Gene omics information

Query gene ID	Zm.11141.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.11141.1.A1_at	BM338572	-	-	1e-7	At1g64780	ATAMT1	S.X.	H.G.	Please select
0.35	38.9	Zm.10412.1.S1_at	BM333072	choline/ethanolamine kinase	-	8e-25	At1g71697	ATCK1 (CHOLINE KINASE 1)	S.X.	H.G.	Please select
0.32	33.4	Zm.3799.1.A1_at	CK367871	hypothetical protein LOC100192947	-	3e-1	At2g03310	unknown protein	S.X.	H.G.	Please select
0.30	29.8	Zm.1615.1.S1_at	AY106014.1	hypothetical protein LOC100279676	-	1e+0	At5g23405	high mobility group (HMG1/2) family protein	S.X.	H.G.	Please select
0.30	29.8	Zm.16151.1.A1_at	BI431175	gibberellin receptor GID1L2	-	5e+0	At2g42300	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.29	28.1	Zm.17998.1.A1_at	BG873837	-	-	2e-35	At3g14940	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	S.X.	H.G.	Please select
0.28	28.1	Zm.3864.1.A1_at	AY106452.1	calmodulin2	-	8e-80	At3g56800	CAM3 (CALMODULIN 3)	S.X.	H.G.	Please select
0.17	10.6	Zm.18770.1.S1_at	CO525135	hypothetical protein LOC100280239	-	4e-1	At2g33220	-	S.X.	H.G.	Please select
0.16	9.4	Zm.2376.7.A1_at	BM079913	-	-	2e-2	At5g60370	unknown protein	S.X.	H.G.	Please select
0.12	5.9	Zm.4271.5.A1_at	AI881217	Hypothetical protein LOC100191665	-	2e+1	At3g55470	C2 domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.3	99.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.8	99.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.8	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.5	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.0	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.9	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	1003	Zm.11141.1.S1_at	AY106810.1	hypothetical protein LOC100272903	-	1e-7	At1g64780	ATAMT1	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.4412.1.S1_at	AI714727	MYB-like protein 1	-	4e-9	At4g22680	MYB85 (myb domain protein 85)	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.6666.1.S1_at	CF049927	hypothetical protein LOC100192879	-	2e-23	At1g64520	RPN12a (Regulatory Particle non-ATPase 12a)	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.6666.1.S1_x_at	CF049927	hypothetical protein LOC100192879	-	2e-23	At1g64520	RPN12a (Regulatory Particle non-ATPase 12a)	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.6185.1.A1_at	BG873990	serologically defined breast cancer antigen NY-BR-84	-	2e-1	At1g22200	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.450.1.S1_at	CN845202	myosin XI	-	1e-78	At2g33240	XID	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.9762.1.A1_at	CF629937	hypothetical protein LOC100277958	-	3e-11	At3g45610	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.9197.2.A1_at	CF637986	-	-	2e+0	At5g44460	calcium-binding protein, putative	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.8830.1.A1_at	BM332643	-	-	4e-1	At2g42885	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-7	57	Arabidopsis thaliana	At1g64780	842786	ATAMT1	encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e-8	61	Glycine max	Gma.9265.1.S1_at	BU551320	-	-	6e-6	At4g28700	AMT1	C.G.	S.X.	Please select
0.40	5e-86	317	Hordeum vulgare	Contig20708_at	Contig20708	-	-	1e-4	At4g13510	AMT1	C.G.	S.X.	Please select
0.28	5e-132	472	Oryza sativa	Os04g0509600	AF001505.1	-	-	1e-12	At1g64780	ATAMT1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	8e-13	75	Populus trichocarpa	PtpAffx.215156.1.S1_at	pmrna29194	ammonium transporter	-	6e-2	At1g64780	ATAMT1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.25	9e-114	410	Triticum aestivum	Ta.27312.1.S1_x_at	BT009318.1	Ammonium transporter	-	8e-17	At4g13510	AMT1	C.G.	S.X.	Please select
0.09	4e-5	48	Vitis vinifera	1610744_at	CF415597	hypothetical protein LOC100258016	-	1e+0	At2g47170	ARF1A1C	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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