Gene omics information

Query gene ID	Zm.10850.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.10850.1.A1_at	AY106263.1	-	-	8e-1	At5g40420	OLEO2 (OLEOSIN 2)	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.721.1.A1_at	AI665110	hypothetical protein LOC100274867	-	3e+0	At3g10980	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.8636.1.A1_at	BM075018	-	-	2e+1	At5g55507	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.29	28.1	Zm.14450.1.A1_at	AI391911	SBP-domain protein 5	-	8e-4	At2g42200	SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)	S.X.	H.G.	Please select
0.26	22.7	Zm.17643.1.S1_at	CK368600	-	-	2e-1	At5g54850	unknown protein	S.X.	H.G.	Please select
0.20	14.2	Zm.13543.1.A1_at	AY108273.1	-	-	2e-22	At1g63160	replication factor C 40 kDa, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.3	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.7	99.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.3	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.7	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.0	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	801	Zm.10850.1.S1_at	AY106263.1	ZIM motif family protein	-	8e-1	At5g40420	OLEO2 (OLEOSIN 2)	C.G.	S.X.	Please select
0.08	4e-13	73	Zm.8525.1.A1_at	BM074538	pnFL-2	-	1e-1	At3g22275	unknown protein	C.G.	S.X.	Please select
0.04	1e-7	56	Zm.3225.1.S1_at	BE512131	hypothetical protein LOC100191257	-	2e-3	At1g74950	TIFY10B	C.G.	S.X.	Please select
0.04	6e-6	50	Zm.12893.1.A1_at	CA401197	-	-	2e+1	At5g07040	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	2e-2	38	Zm.124.1.S1_at	CF058601	dof zinc finger protein MNB1A	-	7e-7	At3g52440	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.02	9e-2	36	Zm.3879.1.A1_at	CK347777	hypothetical protein LOC100191700	-	7e-23	At3g18140	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.04	9e-2	36	Zm.12358.1.S1_at	CO534920	hypothetical protein LOC100274476	-	1e+0	At3g01050	MUB1 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 PRECURSOR)	C.G.	S.X.	Please select
0.04	9e-2	36	Zm.11829.1.A1_at	BM381101	-	-	4e+0	At1g26750	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	34	ZmAffx.919.1.S1_at	AI782958	hypothetical protein LOC100216987	-	3e+0	At1g54720	early-responsive to dehydration protein-related / ERD protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-1	34	Arabidopsis thaliana	At5g40420	834040	OLEO2 (OLEOSIN 2)	Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.C149000013_at	PsAffx.C149000013	-	-	2e+1	At4g32785	-	C.G.	S.X.	Please select
0.13	2e-27	121	Hordeum vulgare	Contig11225_at	Contig11225	-	-	7e+0	At5g13220	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	C.G.	S.X.	Please select
0.10	2e-9	63	Oryza sativa	Os10g0392400	AK061602.1	-	ZIM domain containing protein	5e-1	At5g56320	ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.221239.1.S1_at	pmrna37975	-	-	4e-135	Atmg00660	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	5e-27	121	Triticum aestivum	Ta.30507.1.S1_a_at	CK214499	-	-	2e+0	At5g35230	unknown protein	C.G.	S.X.	Please select
0.06	9e-1	32	Vitis vinifera	1610294_at	CF373126	-	-	4e-13	At4g25835	AAA-type ATPase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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