Gene omics information

Query gene ID	Zm.1079.4.S1_x_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.1079.4.S1_x_at	AY109373.1	-	-	2e-2	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	S.X.	H.G.	Please select
0.67	85.8	Zm.13661.1.A1_at	AY107142.1	-	-	2e+0	At4g25710	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.17605.1.S1_at	CK368440	-	-	4e-1	At1g03457	RNA-binding protein, putative	S.X.	H.G.	Please select
0.50	65.7	Zm.2986.1.A1_at	AF056326.1	low phytic acid1	-	4e-105	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	S.X.	H.G.	Please select
0.50	65.7	Zm.6468.1.A1_at	AI692046	hypothetical protein LOC100277167	-	1e-3	At1g14440	AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31)	S.X.	H.G.	Please select
0.47	59.9	Zm.12977.2.S1_at	AI677017	Hypothetical protein LOC100193319	-	5e-5	At1g15370	-	S.X.	H.G.	Please select
0.38	44.2	Zm.12511.1.S1_at	AW062063	hypothetical protein LOC100276976	-	5e+0	At5g53110	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.8	99.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.0	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.3	99.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.2	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.1	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.9	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.4	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.3	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.8	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.83	0	1786	Zm.1079.4.S1_at	AY109373.1	-	-	2e-2	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.39	0	1786	Zm.1079.4.A1_s_at	BG842635	hypothetical protein LOC100274597	-	2e-2	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.40	0	1447	Zm.1079.1.A1_a_at	U08401.1	hypothetical protein LOC100275493 /// carbonic anhydrase /// carbonic anhydrase	-	1e+0	At3g01500	CA1 (CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.40	0	1447	Zm.1079.1.A1_x_at	U08401.1	hypothetical protein LOC100275493	-	1e+0	At3g01500	CA1 (CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.28	0	743	Zm.1079.6.A1_at	CF634247	carbonic anhydrase	-	5e-1	At1g56550	UDP-xylosyltransferase	C.G.	S.X.	Please select
0.28	0	668	Zm.1079.3.A1_at	BM347782	-	-	3e-2	At1g23730	BCA3 (BETA CARBONIC ANHYDRASE 4)	C.G.	S.X.	Please select
0.22	1e-128	460	Zm.6151.1.A1_at	BE519343	hypothetical protein LOC100274597	-	2e+0	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.22	1e-128	460	Zm.6151.1.A1_s_at	BE519343	hypothetical protein LOC100274597	-	2e+0	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.14	5e-97	355	Zm.1079.5.A1_a_at	M95073.1	-	-	6e-3	At1g23730	BCA3 (BETA CARBONIC ANHYDRASE 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	42	Arabidopsis thaliana	At5g14740	831326	CA2 (CARBONIC ANHYDRASE 2)	Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e+0	36	Glycine max	Gma.10892.1.S1_a_at	BG839570	-	-	1e-11	At3g01500	CA1 (CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.22	1e-91	337	Hordeum vulgare	Contig897_s_at	Contig897	carbonic anhydrase	-	2e+0	At4g18570	proline-rich family protein	C.G.	S.X.	Please select
0.24	4e-104	381	Oryza sativa	Os01g0639900	AF182806.1	-	Carbonic anhydrase, chloroplast precursor (EC4.2.1.1) (Carbonate dehydratase)	6e-1	At1g50390	fructokinase-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	7e+0	34	Populus trichocarpa	PtpAffx.31351.1.A1_at	CV239042	-	-	4e+0	At2g32720	CB5-B (CYTOCHROME B5 ISOFORM B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	3e-69	264	Triticum aestivum	Ta.5227.1.S1_at	BE213258	-	-	2e-1	At4g23890	unknown protein	C.G.	S.X.	Please select
0.02	3e-5	50	Vitis vinifera	1611901_s_at	CF517137	hypothetical protein LOC100253335	-	4e-11	At1g70410	carbonic anhydrase, putative / carbonate dehydratase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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