CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.107.1.S1_at

Gene name glutamine synthetase2

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 77.8 Zm.107.1.S1_at AY104270.1 glutamine synthetase2 - 2e-17 At3g17820 ATGSKB6 S.X. H.G.
0.38 44.2 Zm.14508.1.S1_at BM349650 - - 2e-7 At1g22620 ATSAC1 (suppressor of actin 1) S.X. H.G.
0.30 29.8 Zm.5193.1.A1_at AI612356 chitin-inducible gibberellin-responsive protein 2 - 1e+0 At5g51210 OLEO3 (OLEOSIN3) S.X. H.G.
0.16 9.4 Zm.5172.1.A1_at BM266341 - - 1e-1 At1g79960 OFP14 (OVATE FAMILY PROTEIN 14) S.X. H.G.
0.14 7.7 Zm.18403.1.A1_at BM072852 hypothetical protein LOC100274307 - 5e-3 At5g38120 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein S.X. H.G.
0.12 5.9 ZmAffx.7.1.S1_at AY683004.1 monosaccharide transport protein 1 - 4e-9 At1g50310 STP9 (SUGAR TRANSPORTER 9) S.X. H.G.
0.10 4.6 Zm.8478.2.A1_x_at BM381399 hypothetical protein LOC100275408 - 1e+0 At3g27890 NQR (NADPH:QUINONE OXIDOREDUCTASE) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
23.3 99.5 GSM162265 Wild type 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
20.5 99.3 GSM162266 Wild type 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
13.4 98.8 GSM162264 Mutant 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
9.2 98.2 GSM202409 Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep6 GSE8188 Expression profiling of zmet2-m1 mutants relative to wild-type
8.4 98.1 GSM202408 Zmet2 study 11-day seedling aerial tissue genotype B73 Rep6 GSE8188 Expression profiling of zmet2-m1 mutants relative to wild-type
7.6 97.9 GSM253271 ZM_4.5d_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
7.6 97.9 GSM202405 Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep5 GSE8188 Expression profiling of zmet2-m1 mutants relative to wild-type
7.1 97.7 GSM202404 Zmet2 study 11-day seedling aerial tissue genotype B73 Rep5 GSE8188 Expression profiling of zmet2-m1 mutants relative to wild-type
5.9 97.3 GSM202401 Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep4 GSE8188 Expression profiling of zmet2-m1 mutants relative to wild-type
5.5 97.1 GSM253267 ZM_4d_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 4e-164 577 Zm.45.1.A1_at D14576.1 glutamine synthetase5 - 2e-51 At3g17820 ATGSKB6 C.G. S.X.
0.53 5e-148 523 Zm.46.1.A1_s_at BM351264 glutamine synthetase4 /// glutamine synthetase5 - 3e-43 At3g17820 ATGSKB6 C.G. S.X.
0.48 1e-124 446 Zm.15859.1.A1_at D14578.1 glutamine synthetase - 9e-22 At5g37600 ATGSR1 C.G. S.X.
0.25 5e-77 287 Zm.3455.3.A1_at BQ619345 glutamine synthetase - 3e-14 At1g66200 ATGSR2 C.G. S.X.
0.06 9e-8 57 Zm.3369.1.A1_at BM379459 glutamine synthetase1 - 4e-55 At5g35630 GS2 (GLUTAMINE SYNTHETASE 2) C.G. S.X.
0.02 2e-2 40 Zm.6192.1.S1_a_at CK394758 - - 5e-1 At3g52990 pyruvate kinase, putative C.G. S.X.
0.01 3e-1 36 Zm.18775.1.A1_at BM074499 calcium/calmodulin dependent protein kinase-like - 2e+0 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein C.G. S.X.
0.02 3e-1 36 Zm.17309.1.A1_s_at CK369677 t-snare - 4e+0 At5g64680 unknown protein C.G. S.X.
0.02 3e-1 36 Zm.17309.1.A1_at CK369677 - - 4e+0 At5g64680 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 2e-17 91 Arabidopsis thaliana At3g17820 821050 ATGSKB6 encodes a cytosolic glutamine synthetase, the enzyme has low affinity with substrate ammonium - - - C.G. S.X.
0.22 9e-20 99 Glycine max Gma.3518.1.S1_at AF301590.1 glutamate--ammonia ligase - 2e-109 At5g37600 ATGSR1 C.G. S.X.
0.62 0 1015 Hordeum vulgare Contig1648_at Contig1648 - - 3e-18 At1g66200 ATGSR2 C.G. S.X.
0.59 0 880 Oryza sativa Os03g0712800 AK063913.1 - Glutamine synthetase root isozyme 2 (EC 6.3.1.2)(Glutamate--ammonia ligase) 4e-18 At5g37600 ATGSR1 C.G. S.X.
0.22 2e-30 135 Populus trichocarpa Ptp.7575.1.S1_s_at CV268151 hypothetical protein - 7e-103 At5g37600 ATGSR1 C.G. S.X.
0.63 0 983 Triticum aestivum TaAffx.143995.4.S1_s_at AY491970 - - 1e-23 At5g37600 ATGSR1 C.G. S.X.
0.38 5e-24 111 Vitis vinifera 1609819_s_at CF209842 glutamine synthetase - 5e-42 At3g17820 ATGSKB6 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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