Gene omics information

Query gene ID	Zm.10640.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.10640.1.S1_at	AY107547.1	-	-	2e-5	At1g15120	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	S.X.	H.G.	Please select
0.33	36.0	Zm.9903.1.A1_at	BM335103	hypothetical protein LOC100273348	-	3e+0	At1g63220	C2 domain-containing protein	S.X.	H.G.	Please select
0.27	24.6	Zm.17762.1.S1_at	CK369807	hydrophobic protein LTI6B	-	4e-3	At3g05890	RCI2B (RARE-COLD-INDUCIBLE 2B)	S.X.	H.G.	Please select
0.15	8.6	Zm.9703.1.A1_at	BM348340	hypothetical protein LOC100191161 /// hypothetical protein LOC100272965	-	5e+0	Atcg01020	-	S.X.	H.G.	Please select
0.13	6.8	Zm.9567.1.S1_at	BM378205	-	-	5e-10	At5g10780	-	S.X.	H.G.	Please select
0.11	5.3	Zm.1666.1.S1_at	CF638202	Hypothetical protein LOC100191200	-	7e-1	At3g04640	glycine-rich protein	S.X.	H.G.	Please select
0.09	4.0	Zm.11835.1.A1_at	BM381123	gastric triacylglycerol lipase	-	3e+0	At1g27890	CCR4-NOT transcription complex protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.3	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM253245	ZM_12h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.6	97.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM323172	Zm_SG200Dpep1_24hpi_III	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
4.9	96.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM253246	ZM_12h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.4	96.2	GSM253266	ZM_4d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-10	65	Zm.9553.1.A1_at	BM266501	hypothetical protein LOC100277290	-	3e-2	At2g01090	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	C.G.	S.X.	Please select
0.10	1e-10	65	Zm.1085.2.A1_a_at	BQ619399	photosystem I reaction center subunit V /// photosystem I reaction center subunit V	-	1e-8	At1g55670	PSAG (PHOTOSYSTEM I SUBUNIT G)	C.G.	S.X.	Please select
0.10	1e-10	65	Zm.1085.2.A1_at	BQ619399	photosystem I reaction center subunit V	-	1e-8	At1g55670	PSAG (PHOTOSYSTEM I SUBUNIT G)	C.G.	S.X.	Please select
0.06	8e-3	40	Zm.7064.1.S1_at	AY107160.1	hypothetical protein LOC100278643	-	4e-1	At2g01090	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.9569.1.A1_at	AY103610.1	polyadenylate-binding protein 2	-	5e-7	At5g65260	polyadenylate-binding protein family protein / PABP family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.7090.1.S1_at	AY105718.1	hypothetical protein LOC100191899	-	6e+0	At5g01740	-	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5578.1.A1_at	BG841692	polyadenylate-binding protein 2	-	2e-21	At5g51120	PABN1 (POLYADENYLATE-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5430.1.S1_at	AJ558238.1	KZM2 protein	-	7e-12	At4g18290	KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5155.2.S1_at	AY110523.1	hypothetical protein LOC100273191	-	8e-4	At5g21010	ATBPM5 (BTB-POZ and MATH domain 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	2e-5	50	Arabidopsis thaliana	At1g15120	838075	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, mitochondrial respiratory chain complex III;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	3e-8	59	Glycine max	Gma.7569.1.S1_at	CD413554	-	-	4e-26	At2g01090	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	C.G.	S.X.	Please select
0.34	3e-36	151	Hordeum vulgare	Contig7618_at	Contig7618	-	-	3e-10	At1g15120	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	C.G.	S.X.	Please select
0.26	2e-34	147	Oryza sativa	Os11g0162200	AK060396.1	-	-	3e-7	At1g15120	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	2e-6	54	Populus trichocarpa	Ptp.4919.1.S1_at	CF234063	hypothetical protein	-	4e-28	At2g01090	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	7e-36	151	Triticum aestivum	Ta.12748.2.S1_x_at	CK212529	-	-	9e-11	At1g15120	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1615870_at	CF512659	-	-	2e+0	At4g32610	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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