Gene omics information

Query gene ID	Zm.106.1.A1_at
Gene name	glycine-rich protein3
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.106.1.A1_at	Y07781.1	glycine-rich protein3	-	4e-2	At3g06130	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.38	44.2	Zm.14408.1.A1_a_at	BM336357	hypothetical protein LOC100191818 /// ubiquitin-conjugating enzyme E2 16	-	1e-44	At5g25760	PEX4 (PEROXIN4)	S.X.	H.G.	Please select
0.31	31.6	ZmAffx.1187.1.S1_at	BE012211	-	-	3e+0	At4g29033	-	S.X.	H.G.	Please select
0.12	5.9	Zm.13635.1.A1_at	AY107316.1	growth regulator like protein	-	4e+0	At3g52070	unknown protein	S.X.	H.G.	Please select
0.11	5.3	Zm.3034.1.A1_at	AW134469	ZCN15 protein	-	2e-2	At2g27550	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	S.X.	H.G.	Please select
0.09	4.0	Zm.11630.1.A1_at	BM379429	-	-	4e+0	At4g13570	HTA4	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.4	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.7	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.2	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	6e-144	510	Zm.17547.1.S1_at	CK371522	fibroin heavy chain	-	1e-1	At3g05920	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.6509.1.S1_at	CO528105	hypothetical protein LOC100193730	-	5e-11	At1g74640	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.6147.2.S1_at	CD942228	-	-	4e-24	At3g51800	ATG2	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.3558.1.A1_at	CA402352	-	-	3e+0	At1g68620	hydrolase	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.237.1.S1_at	AJ011616.1	SBP-domain protein3	-	2e-8	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	C.G.	S.X.	Please select
0.03	7e-2	38	ZmAffx.999.1.S1_at	AI881222	hypothetical protein LOC100279401	-	5e-2	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	C.G.	S.X.	Please select
0.04	7e-2	38	ZmAffx.999.1.A1_at	AI881222	-	-	2e-4	At1g54215	proline-rich family protein	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.18024.1.S1_at	AY530730.1	thylakoid assembly8	-	3e-2	At1g54215	proline-rich family protein	C.G.	S.X.	Please select
0.04	7e-2	38	Zm.10811.1.A1_s_at	CK370484	hypothetical protein LOC100192755 /// hypothetical protein LOC100277885 /// glycine-rich protein	-	1e-7	At4g39260	GR-RBP8	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	40	Arabidopsis thaliana	At3g06130	819786	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cell wall;MBOPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-1	38	Glycine max	HgAffx.12256.1.S1_at	CB375726	-	-	2e-1	At3g43520	unknown protein	C.G.	S.X.	Please select
0.03	1e-3	44	Hordeum vulgare	Contig11133_at	Contig11133	-	-	4e-1	At4g29480	mitochondrial ATP synthase g subunit family protein	C.G.	S.X.	Please select
0.05	1e-3	46	Oryza sativa	OsAffx.121.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.51517.1.A1_at	CV254879	hypothetical protein	-	4e-1	At3g59640	glycine-rich protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	1e-116	420	Triticum aestivum	TaAffx.31428.1.S1_at	CA616509	-	-	3e-1	At3g13227	serine-rich protein-related	C.G.	S.X.	Please select
0.04	7e-4	44	Vitis vinifera	1616806_at	CF605749	hypothetical protein LOC100259004	-	6e-2	At2g01340	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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