Gene omics information

Query gene ID	Zm.10534.1.A1_x_at
Gene name	receptor protein kinase CLAVATA1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.10534.1.A1_x_at	CO049306	receptor protein kinase CLAVATA1	-	2e+0	At2g36890	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	S.X.	H.G.	Please select
0.71	88.2	Zm.7620.1.A1_at	CF629426	hypothetical protein LOC100279978	-	2e-3	At2g24010	scpl23 (serine carboxypeptidase-like 23)	S.X.	H.G.	Please select
0.53	69.1	Zm.13788.1.S1_at	AW313252	thioredoxin reductase 2	-	5e-5	At4g35460	NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B)	S.X.	H.G.	Please select
0.50	65.7	Zm.2810.1.S1_at	CK371548	calcitonin peptide-receptor component protein	-	7e-1	At1g18170	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	S.X.	H.G.	Please select
0.47	59.9	Zm.7941.1.A1_at	BM080529	-	-	1e+0	At3g50040	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.2016.1.S1_at	AW566149	zinc finger, C3HC4 type family protein	-	2e+0	At5g51195	unknown protein	S.X.	H.G.	Please select
0.42	51.3	Zm.5180.1.A1_at	AI612313	-	-	1e+1	At5g27090	AGL54	S.X.	H.G.	Please select
0.36	41.3	Zm.218.1.A1_a_at	AB016802.1	ABA stimulation MAP kinase	-	6e-42	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.9	99.1	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
10.9	98.5	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
9.1	98.2	GSM375796	Deep-sowing 10d treatment GA3, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
7.5	97.8	GSM375795	Deep-sowing 10d treatment Control, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
7.4	97.8	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
5.9	97.3	GSM385708	Deep-sowing 10d treatment IAA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
5.9	97.3	GSM206320	Lower pulvinus 15 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.9	97.3	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.8	97.2	GSM206333	Lower pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.8	97.2	GSM206297	Lower pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	1e-21	103	Zm.18409.1.A1_at	CO532665	hypothetical protein LOC100191200	-	5e+0	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	C.G.	S.X.	Please select
0.14	3e-19	95	Zm.1666.1.A1_at	AW574495	systemin receptor SR160	-	7e-1	At3g22800	leucine-rich repeat family protein / extensin family protein	C.G.	S.X.	Please select
0.08	3e-19	95	Zm.1666.1.S1_at	CF638202	Hypothetical protein LOC100191200	-	7e-1	At3g04640	glycine-rich protein	C.G.	S.X.	Please select
0.01	2e-1	36	ZmAffx.1214.1.S1_s_at	13397940	hypothetical protein LOC100192494 /// hypothetical protein LOC100275739	-	7e-3	At2g01021	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.9749.1.S1_a_at	CO521810	-	-	3e+0	At1g02850	BGLU11 (BETA GLUCOSIDASE 11)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.9749.3.A1_at	BM337752	-	-	2e+0	At1g04330	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.9191.1.A1_at	BM350157	hypothetical protein LOC100279424	-	6e-4	At4g40100	ABA-responsive protein-related	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.3959.2.A1_at	AY110235.1	integral membrane protein like	-	1e-20	At1g34020	transporter-related	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.3959.2.A1_a_at	AY110235.1	hypothetical protein LOC100193090 /// hypothetical protein LOC100216942 /// integral membrane protein like	-	1e-20	At1g34020	transporter-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At2g36890	818262	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	"Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB38, regulates axillary meristem formation. "	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	PsAffx.psHB013xM21f_s_at	PsAffx.psHB013xM21f	-	-	1e+0	At1g18960	myb family transcription factor	C.G.	S.X.	Please select
0.29	2e-20	99	Hordeum vulgare	Contig9427_at	Contig9427	-	-	7e-1	At3g22800	leucine-rich repeat family protein / extensin family protein	C.G.	S.X.	Please select
0.25	6e-45	182	Oryza sativa	Os07g0176400	C22382	-	Conserved hypothetical protein	2e+0	At5g55570	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	6e-1	36	Populus trichocarpa	PtpAffx.215292.1.S1_at	pmrna29386	hypothetical protein	-	2e+1	At5g44585	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	9e-18	91	Triticum aestivum	Ta.25631.1.A1_at	CK195720	-	-	4e-1	At2g04038	AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48)	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1619067_at	CB339465	hypothetical protein LOC100259429	-	8e-27	At1g70760	CRR23 ((chlororespiratory reduction 23)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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