Gene omics information

Query gene ID	Zm.10513.2.S1_a_at
Gene name	hypothetical protein LOC100277818
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	90.3	Zm.10513.2.S1_a_at	AY106791.1	hypothetical protein LOC100277818	-	3e-3	At1g68390	unknown protein	S.X.	H.G.	Please select
0.49	61.9	Zm.10549.1.A1_at	BQ538239	hypothetical protein LOC100277053	-	1e+0	At5g35890	beta-galactosidase	S.X.	H.G.	Please select
0.48	61.3	ZmAffx.732.1.S1_at	AI740043	-	-	5e+0	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	S.X.	H.G.	Please select
0.45	56.4	ZmAffx.751.1.A1_at	AI745874	-	-	1e+1	At5g44990	-	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.57.1.A1_at	AI665066	cupin family protein	-	1e+1	At3g43083	LCR33 (Low-molecular-weight cysteine-rich 33)	S.X.	H.G.	Please select
0.39	45.6	Zm.10563.1.S1_at	CF007885	hypothetical protein LOC100193826	-	3e-6	At3g10850	GLY2	S.X.	H.G.	Please select
0.36	41.3	Zm.10674.1.A1_at	BM380580	hypothetical protein LOC100194243	-	1e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	S.X.	H.G.	Please select
0.34	37.2	Zm.12481.1.A1_at	AI920547	-	-	4e+0	At3g30845	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.1094.1.A1_at	BM339500	-	-	2e-5	At5g26210	AL4 (ALFIN-LIKE 4)	S.X.	H.G.	Please select
0.26	22.7	Zm.10553.1.A1_at	CD441187	-	-	4e+0	At1g22710	SUC2 (SUCROSE-PROTON SYMPORTER 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.8	99.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.4	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.1	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.62	0	1852	Zm.10513.2.A1_at	AY106791.1	-	-	3e-3	At1g68390	unknown protein	C.G.	S.X.	Please select
0.54	0	956	Zm.10513.1.S1_at	AY105530.1	hypothetical protein LOC100277818	-	1e-1	At5g46730	glycine-rich protein	C.G.	S.X.	Please select
0.39	7e-58	224	Zm.1820.1.S1_at	CF009592	-	-	2e-3	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please select
0.02	5e-3	42	Zm.11372.1.A1_at	BM350048	-	-	1e+0	At1g14160	integral membrane family protein	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.6231.1.A1_x_at	AY104594.1	60S ribosomal protein L10-3	-	6e+0	At3g46040	RPS15AD (ribosomal protein S15A D)	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.436.1.S1_at	AF100455.1	liguleless3	-	2e-10	At1g62360	STM (SHOOT MERISTEMLESS)	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.17352.1.A1_at	CF636500	-	-	4e+0	At5g53030	unknown protein	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.13961.1.S1_at	AY540745.1	hydroperoxide lyase	-	4e+0	At2g05440	glycine-rich protein	C.G.	S.X.	Please select
0.02	8e-2	38	Zm.623.1.A1_at	AF342810.1	NOD26-like membrane integral protein ZmNIP2-3	-	6e-1	At3g06750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-3	44	Arabidopsis thaliana	At1g68390	843168	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e-3	44	Glycine max	PsAffx.psHB029xP23f_at	PsAffx.psHB029xP23f	-	-	4e+0	At4g08685	SAH7	C.G.	S.X.	Please select
0.11	1e-7	57	Hordeum vulgare	Contig21804_at	Contig21804	-	-	4e+0	At5g28610	-	C.G.	S.X.	Please select
0.15	3e-20	101	Oryza sativa	OsAffx.24114.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-1	38	Populus trichocarpa	PtpAffx.217465.1.S1_s_at	pmrna32734	chalcone isomerase-like protein	-	5e-1	At2g17670	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	1e-8	61	Triticum aestivum	Ta.3773.1.S1_at	BJ250703	-	-	1e-1	At1g15340	MBD10	C.G.	S.X.	Please select
0.02	1e-2	40	Vitis vinifera	1619140_at	CF606031	hypothetical protein LOC100246049	-	4e-4	At2g35270	DNA-binding protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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