Gene omics information

Query gene ID	Zm.10492.1.S1_at
Gene name	hypothetical protein LOC100272277
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.10492.1.S1_at	CA826941	hypothetical protein LOC100272277	-	5e+0	At2g14378	-	S.X.	H.G.	Please select
0.12	5.9	Zm.9797.1.A1_at	BM341227	-	-	4e+0	At3g58180	PBS lyase HEAT-like repeat-containing protein	S.X.	H.G.	Please select
0.07	2.9	Zm.10554.1.A1_at	CA398680	-	-	3e-10	At2g44090	-	S.X.	H.G.	Please select
0.06	2.3	ZmAffx.85.1.S1_at	AI665306	Alpha-6-galactosyltransferase	-	8e-1	At2g22900	galactosyl transferase GMA12/MNN10 family protein	S.X.	H.G.	Please select
0.04	1.5	Zm.13841.1.S1_at	AY104076.1	-	-	2e-42	At3g62270	anion exchange family protein	S.X.	H.G.	Please select
0.04	1.5	ZmAffx.1489.1.S1_at	11990232-46	-	-	0	Atcg00680	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.8	99.4	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
8.5	98.1	GSM202406	Zmet2 study 11-day seedling aerial tissue genotype Mo17 Rep2	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
8.0	98.0	GSM202410	Zmet2 study 11-day seedling aerial tissue genotype Mo17 Rep3	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
7.8	97.9	GSM202407	Zmet2 study 11-day seedling aerial tissue genotype Mo17 zmet2-m1 Rep2	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
7.5	97.8	GSM202287	Mo17xB73 11-day seedling aerial tissue biological replicate 3	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
7.0	97.7	GSM202281	Mo17 11-day seedling aerial tissue biological replicate 2	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
6.8	97.6	GSM202414	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep3	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
6.8	97.6	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM202277	Mo17 11-day seedling aerial tissue biological replicate 1	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
6.4	97.5	GSM202404	Zmet2 study 11-day seedling aerial tissue genotype B73 Rep5	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-5	48	Zm.4471.3.A1_x_at	BQ619323	pyruvate, orthophosphate dikinase1	-	6e+0	At2g36895	unknown protein	C.G.	S.X.	Please select
0.04	3e-5	48	Zm.1583.2.A1_a_at	BM341711	hypothetical protein LOC100193619 /// hydrophobic protein LTI6A /// hydrophobic protein LTI6A	-	1e+0	At3g59440	calcium-binding protein, putative	C.G.	S.X.	Please select
0.03	8e-3	40	Zm.7920.1.S1_at	BQ619130	hypothetical protein LOC100273327	-	7e+0	At4g27470	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	3e-2	38	Zm.4471.1.A2_at	J03901.1	pyruvate, orthophosphate dikinase1	-	4e-26	At4g15530	PPDK (pyruvate orthophosphate dikinase)	C.G.	S.X.	Please select
0.01	3e-2	38	Zm.4471.1.A1_a_at	J03901.1	pyruvate, orthophosphate dikinase1	-	4e-26	At4g15530	PPDK (pyruvate orthophosphate dikinase)	C.G.	S.X.	Please select
0.01	3e-2	38	Zm.4471.1.A1_x_at	J03901.1	pyruvate, orthophosphate dikinase1	-	4e-26	At4g15530	PPDK (pyruvate orthophosphate dikinase)	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.3883.1.S1_at	AY105500.1	beta-amylase	-	2e-1	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.13055.1.S1_at	CF637576	-	-	2e-14	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.1085.2.A1_a_at	BQ619399	photosystem I reaction center subunit V /// photosystem I reaction center subunit V	-	1e-8	At1g55670	PSAG (PHOTOSYSTEM I SUBUNIT G)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At2g14378	5007875	-	Encodes a ECA1 gametogenesis related family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.74664.1.S1_at	BU965032	-	-	1e-2	At1g54170	CID3 (CTC-Interacting Domain 3)	C.G.	S.X.	Please select
0.07	2e-3	42	Hordeum vulgare	Contig11514_at	Contig11514	-	-	6e+0	At4g14830	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	36	Oryza sativa	Os10g0368200	AK061084.1	-	Conserved hypothetical protein	3e-2	At4g08230	glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+1	30	Populus trichocarpa	PtpAffx.75910.1.A1_at	CV252708	-	-	1e-8	At5g20860	pectinesterase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e-1	36	Triticum aestivum	Ta.345.2.S1_at	BE399757	-	-	2e-1	At1g18360	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1612454_at	CF372709	-	-	1e+0	At1g52200	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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