Gene omics information

Query gene ID	Zm.1047.1.S1_at
Gene name	hypothetical protein LOC100277178
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.1047.1.S1_at	CB381142	hypothetical protein LOC100277178	-	1e+0	At1g10865	-	S.X.	H.G.	Please select
0.67	85.8	Zm.14052.1.A1_at	CF036019	hypothetical protein LOC100272508	-	3e-17	At2g22400	NOL1/NOP2/sun family protein	S.X.	H.G.	Please select
0.63	81.1	Zm.10865.1.A1_at	CF638037	hypothetical protein LOC100275271	-	1e-6	At2g44090	-	S.X.	H.G.	Please select
0.63	81.1	Zm.4618.1.A1_at	AW066311	pre-mRNA-splicing factor ISY1	-	4e-7	At3g18790	-	S.X.	H.G.	Please select
0.60	77.8	Zm.264.2.A1_x_at	CF012670	acetyl-coenzyme A carboxylase	-	8e+0	At5g02890	transferase family protein	S.X.	H.G.	Please select
0.57	75.1	Zm.24.2.S1_at	AJ001635.1	viviparous1	-	3e+0	At2g40765	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.3611.1.S1_at	CA403298	choline-phosphate cytidylyltransferase B	-	2e-22	At4g15130	catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	97.3	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.9	96.7	GSM205374	B73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.8	96.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.3	96.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM205376	B73xMo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.7	95.4	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.3	94.7	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.2	94.5	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-1	36	Zm.16994.1.A1_at	AI649902	Methionine synthase	-	7e-163	At5g17920	ATMS1	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5076.1.A1_at	AI600726	hypothetical protein LOC100193426	-	6e+0	At5g03170	FLA11	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4472.1.A1_at	BG266227	hypothetical protein LOC100194169	-	2e+0	At5g50175	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4313.1.S1_at	CD446292	hypothetical protein LOC100193079	-	2e-6	At5g49010	SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.3985.1.S1_at	AI820300	-	-	5e+0	At4g08670	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.17690.2.A1_a_at	CF624554	dirigent-like protein	-	1e+0	At4g18070	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.17091.1.A1_at	CF627429	-	-	1e+0	At2g18780	F-box family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.13613.1.A1_at	CF623212	hypothetical protein LOC100275557	-	3e-6	At4g21490	NDB3	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.10534.1.A1_x_at	CO049306	receptor protein kinase CLAVATA1	-	2e+0	At2g36890	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	1e+0	34	Arabidopsis thaliana	At1g10865	5007681	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	2e-9	63	Glycine max	GmaAffx.41122.1.S1_at	BI321747	-	-	9e-20	At1g10865	-	C.G.	S.X.	Please select
0.27	7e-81	299	Hordeum vulgare	Contig11071_at	Contig11071	-	-	4e-4	At1g10865	-	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	OsAffx.19637.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	8e+0	32	Populus trichocarpa	PtpAffx.209479.1.S1_at	pmrna18798	hypothetical protein	-	2e-14	At1g10865	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.67	5e-136	484	Triticum aestivum	TaAffx.112610.1.S1_at	CA622538	-	-	1e+1	At4g18580	unknown protein	C.G.	S.X.	Please select
0.09	4e-4	44	Vitis vinifera	1608338_at	CA818810	hypothetical protein LOC100262209	-	1e-13	At1g10865	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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