Gene omics information

Query gene ID	Zm.10462.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.10462.1.S1_at	CF010422	-	-	4e-1	At2g15660	AGL95 (AGAMOUS-LIKE 95)	S.X.	H.G.	Please select
0.31	31.6	Zm.15678.2.A1_x_at	CF632171	-	-	5e+0	At1g43130	LCV2 (LIKE COV 2)	S.X.	H.G.	Please select
0.25	21.3	Zm.13710.1.S1_at	AY106560.1	-	-	9e-1	At3g55000	TON1A (TONNEAU 1)	S.X.	H.G.	Please select
0.09	4.0	Zm.761.1.S1_at	CF053892	hypothetical protein LOC100192991	-	6e-37	At1g26630	FBR12 (FUMONISIN B1-RESISTANT12)	S.X.	H.G.	Please select
0.04	1.5	Zm.12885.1.A1_at	AW231493	-	-	4e+0	At4g25570	ACYB-2	S.X.	H.G.	Please select
0.02	0.7	Zm.12635.1.S1_s_at	BQ779227	Histone H4 /// GATA transcription factor 19	-	6e+0	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.8	99.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.4	99.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.3	99.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.1	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.6	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.6	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	2e-56	218	Zm.10488.1.S1_at	CF011147	hypothetical protein LOC100272314	-	4e-1	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.4034.1.A1_at	CF972567	-	-	3e-7	At1g55680	WD-40 repeat family protein	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.5944.1.A1_at	BG874229	pyruvate kinase, cytosolic isozyme	-	2e-97	At3g52990	pyruvate kinase, putative	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.18525.1.A1_at	CO530497	-	-	1e-4	At5g28150	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.12475.1.S1_at	AW600588	-	-	8e-1	At3g54940	-	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9092.1.A1_at	BM266516	hypothetical protein LOC100278247	-	1e+0	At1g25260	acidic ribosomal protein P0-related	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.8341.1.A1_at	AY108192.1	hypothetical protein LOC100192910	-	2e-20	At1g12050	fumarylacetoacetase, putative	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.6988.1.S1_at	AI973474	glyceraldehyde phosphate dehydrogenase B1	-	3e-10	At1g42970	GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5170.1.S1_at	CF349172	hypothetical protein LOC100216995	-	1e-5	At1g44970	peroxidase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	36	Arabidopsis thaliana	At2g15660	816059	AGL95 (AGAMOUS-LIKE 95)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.81618.1.S1_at	AW706403	-	-	2e-1	At5g02760	protein phosphatase 2C family protein / PP2C family protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	EBro03_SQ008_I11_at	EBro03_SQ008_I11	-	-	3e+0	At5g17400	ER-ANT1 (ENDOPLASMIC RETICULUM-DENINE NUCLEOTIDE TRANSPORTER 1)	C.G.	S.X.	Please select
0.04	7e-1	36	Oryza sativa	OsAffx.17793.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.69478.1.A1_at	CX184444	hypothetical protein	-	9e-1	At3g52160	KCS15 (3-KETOACYL-COA SYNTHASE 15)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e-1	36	Triticum aestivum	Ta.9750.3.S1_at	CA734822	-	-	2e+0	At2g18380	transcription factor	C.G.	S.X.	Please select
0.03	3e-2	38	Vitis vinifera	1614337_at	CF209672	-	-	4e+0	At3g12345	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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