Gene omics information

Query gene ID	Zm.1046.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.1046.1.S1_at	CF633990	-	-	2e+0	At5g28610	-	S.X.	H.G.	Please select
0.83	95.6	Zm.7728.1.A1_at	BM079644	-	-	3e-3	At2g33700	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.83	95.6	Zm.8175.1.A1_at	BM382448	-	-	5e-6	At2g39350	ABC transporter family protein	S.X.	H.G.	Please select
0.77	92.1	Zm.18115.1.A1_at	CN845273	ring domain containing protein	-	5e-1	At2g23780	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.73	89.9	Zm.7868.1.S1_at	CF630485	hypothetical protein LOC100216779	-	4e-1	At1g15390	PDF1A (PEPTIDE DEFORMYLASE 1A)	S.X.	H.G.	Please select
0.57	75.1	Zm.6941.1.A1_at	CF638044	-	-	4e-1	At3g46770	transcriptional factor B3 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.8	98.1	GSM258538	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 4	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
5.7	97.2	GSM258532	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 1	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
5.6	97.1	GSM258534	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 2	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
5.5	97.1	GSM258536	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 3	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
5.4	97.0	GSM258535	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 3	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
5.2	96.9	GSM258531	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 1	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
4.7	96.5	GSM258193	Mo17 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
4.3	96.1	GSM258537	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 4	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
3.8	95.5	GSM258192	B84 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
3.7	95.4	GSM258533	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 2	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-2	40	Zm.1477.1.S1_at	AY106401.1	hypothetical protein LOC100193410	-	5e-1	At5g25480	DNMT2 (DNA METHYLTRANSFERASE-2)	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.7060.1.A1_at	CO530085	-	-	4e-1	At3g10500	anac053 (Arabidopsis NAC domain containing protein 53)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.7056.6.A1_at	CF051906	RWD domain-containing protein 1	-	1e-2	At3g52550	-	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.14573.1.S1_at	CO527252	glucan endo-1,3-beta-glucosidase 7	-	9e-1	At3g46570	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.8886.1.A1_at	BM074197	-	-	7e-1	At3g54490	RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E)	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.6402.2.A1_at	AI855074	Dwarf plant9	-	1e-2	At5g17490	RGL3 (RGA-LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.6185.1.A1_at	BG873990	serologically defined breast cancer antigen NY-BR-84	-	2e-1	At1g22200	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.6201.1.A1_at	BE643575	-	-	1e-1	At3g50690	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.3572.1.A1_at	BG873875	harpin-induced protein	-	2e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g28610	832960	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e-2	40	Glycine max	PsAffx.C88000018_at	PsAffx.C88000018	-	-	1e+0	At1g02780	emb2386 (embryo defective 2386)	C.G.	S.X.	Please select
0.07	5e-2	38	Hordeum vulgare	Contig14890_at	Contig14890	-	-	5e-2	At2g18320	-	C.G.	S.X.	Please select
0.18	2e-38	161	Oryza sativa	Os06g0711900	AK105838.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	5e-2	At2g43570	chitinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	PtpAffx.205910.1.S1_at	pmrna11721	hypothetical protein	-	4e-3	At3g28007	nodulin MtN3 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-1	38	Triticum aestivum	TaAffx.104482.1.S1_at	CB884223	-	-	4e-1	At5g05710	pleckstrin homology (PH) domain-containing protein	C.G.	S.X.	Please select
0.03	3e-2	38	Vitis vinifera	1618179_at	CF568870	-	-	4e-3	At1g45230	defective chloroplasts and leaves protein-related / DCL protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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