Gene omics information

Query gene ID	Zm.10383.4.S1_a_at
Gene name	transcription factor subunit NF-YB2 /// hypothetical protein LOC100273424 /// CAAT-box DNA binding protein subunit B (NF-YB)
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.76	91.1	Zm.10383.4.S1_a_at	AY106957.1	transcription factor subunit NF-YB2 /// hypothetical protein LOC100273424 /// CAAT-box DNA binding protein subunit B (NF-YB)	-	3e-12	At3g53340	NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10)	S.X.	H.G.	Please select
0.48	61.3	Zm.4119.1.S1_at	AI854985	ATP binding protein	-	2e-4	At3g09010	protein kinase family protein	S.X.	H.G.	Please select
0.45	56.4	Zm.3168.1.A1_x_at	AW331178	-	-	5e-2	At3g51960	bZIP family transcription factor	S.X.	H.G.	Please select
0.44	55.7	Zm.7021.1.S1_at	CD440551	mitochondrial import inner membrane translocase subunit Tim8	-	3e-4	At5g50810	TIM8	S.X.	H.G.	Please select
0.33	36.0	Zm.17988.1.A1_at	CO520918	-	-	6e-10	At4g26970	aconitate hydratase/ copper ion binding	S.X.	H.G.	Please select
0.33	36.0	Zm.5056.1.A1_at	CA400979	-	-	6e+0	At5g08400	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.157.1.S1_at	AY107763.1	catalase2	-	3e-22	At4g35090	CAT2 (CATALASE 2)	S.X.	H.G.	Please select
0.32	33.4	Zm.15058.1.A1_at	BM380989	beta-propeller domains of methanol dehydrogenase type	-	6e-1	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	S.X.	H.G.	Please select
0.28	28.1	Zm.9879.2.S1_at	CA404875	vignain	-	5e-5	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	S.X.	H.G.	Please select
0.27	24.6	Zm.2163.1.S1_at	AY105593.1	-	-	2e-4	At3g59400	GUN4	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	96.1	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.8	95.5	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.5	95.1	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.5	95.1	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.4	94.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.3	94.7	GSM206302	Upper pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.2	94.5	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.1	94.3	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.1	94.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM206291	Upper pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.95	0	2149	Zm.10383.4.S1_at	AY106957.1	hypothetical protein LOC100273424	-	3e-12	At3g53340	NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10)	C.G.	S.X.	Please select
0.75	0	797	Zm.10383.2.S1_at	BM332575	transcription factor subunit NF-YB2	-	3e-15	At3g53340	NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10)	C.G.	S.X.	Please select
0.27	8e-57	220	Zm.8797.1.A1_at	BM269434	nuclear transcription factor Y subunit B-3	-	2e-16	At5g47640	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	C.G.	S.X.	Please select
0.19	1e-52	206	Zm.13055.2.S1_at	CA403909	nuclear transcription factor Y subunit B-3	-	6e-19	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	C.G.	S.X.	Please select
0.22	7e-48	190	Zm.13055.1.S1_at	CF637576	-	-	2e-14	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	C.G.	S.X.	Please select
0.09	4e-6	52	Zm.7340.1.S1_at	AF410176.1	leafy cotyledon1	-	1e-39	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	C.G.	S.X.	Please select
0.04	4e-6	52	Zm.13848.1.S1_at	AY103654.1	-	-	2e-10	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.9564.1.S1_at	AY106249.1	Transcribed sequence 1087 protein	-	8e-1	At3g01323	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.4255.1.A1_at	AY112172.1	-	-	2e+0	At5g23750	remorin family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	3e-12	73	Arabidopsis thaliana	At3g53340	824502	NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:intracellular, nucleus;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	4e-24	113	Glycine max	GmaAffx.10582.1.S1_at	BM523687	-	-	1e-37	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	C.G.	S.X.	Please select
0.38	5e-120	430	Hordeum vulgare	Contig12964_at	Contig12964	-	-	2e-10	At3g53340	NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10)	C.G.	S.X.	Please select
0.39	4e-133	476	Oryza sativa	Os05g0463800	AK100811.1	-	CCAAT-binding transcription factor-like protein(Fragment)	2e-16	At3g53340	NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	9e-10	65	Populus trichocarpa	PtpAffx.69785.2.A1_a_at	CV243355	hypothetical protein	-	3e-32	At2g38880	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.41	1e-125	450	Triticum aestivum	Ta.4075.1.S1_s_at	BT009078.1	-	-	4e-11	At3g53340	NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10)	C.G.	S.X.	Please select
0.13	1e-20	99	Vitis vinifera	1621148_at	CB003641	-	-	9e-30	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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