Gene omics information

Query gene ID	Zm.10375.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.10375.1.S1_at	BQ703821	-	-	2e-17	At2g35360	ubiquitin family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.9361.1.A1_at	BM349541	-	-	5e+0	At4g09580	-	S.X.	H.G.	Please select
0.50	65.7	Zm.8911.1.A1_at	BM350783	-	-	4e-2	At5g23540	26S proteasome regulatory subunit, putative	S.X.	H.G.	Please select
0.33	36.0	Zm.15314.1.S1_at	CF972544	-	-	1e-11	At3g06080	unknown protein	S.X.	H.G.	Please select
0.27	24.6	Zm.2269.1.S1_at	CF631922	-	-	1e-7	At5g51820	PGM (PHOSPHOGLUCOMUTASE)	S.X.	H.G.	Please select
0.13	6.8	Zm.4183.1.A1_at	AI857198	-	-	4e-1	At4g03113	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.6	99.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	1011	Zm.10375.1.S1_a_at	BQ703821	-	-	2e-17	At2g35360	ubiquitin family protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.6705.1.S1_at	CF349086	hypothetical protein LOC100276359	-	9e-3	At4g27595	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.18049.1.A1_at	CF628818	pathogenesis-related protein PR-1	-	7e-6	At4g25790	allergen V5/Tpx-1-related family protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.13511.1.A1_at	AY108573.1	hypothetical protein LOC100274472	-	4e-1	At2g22250	aminotransferase class I and II family protein	C.G.	S.X.	Please select
0.03	7e+0	30	ZmAffx.126.1.A1_at	AI665940	-	-	3e+0	At5g14910	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.03	7e+0	30	ZmAffx.126.1.S1_at	AI665940	-	-	3e+0	At5g14910	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.9972.1.A1_at	BM350426	hypothetical protein LOC100276236	-	2e+0	At2g30560	glycine-rich protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zm.8099.1.S1_at	BM379930	-	-	5e+0	At5g63905	unknown protein	C.G.	S.X.	Please select
0.01	7e+0	30	Zm.6785.1.A1_a_at	BU037307	S-adenosylmethionine decarboxylase proenzyme	-	3e-1	At3g02468	CPuORF9 (Conserved peptide upstream open reading frame 9)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	2e-17	89	Arabidopsis thaliana	At2g35360	818103	ubiquitin family protein	F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.65454.1.S1_at	BM521435	-	-	4e-15	At3g15380	choline transporter-related	C.G.	S.X.	Please select
0.23	1e-41	169	Hordeum vulgare	Contig9835_at	Contig9835	-	-	2e-3	At2g35360	ubiquitin family protein	C.G.	S.X.	Please select
0.19	2e-40	167	Oryza sativa	Os09g0573100	AK121232.1	-	Ubiquitin domain containing protein	5e-2	At5g22390	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e+0	32	Populus trichocarpa	PtpAffx.220642.1.S1_at	pmrna37052	-	-	2e+0	At4g03565	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	3e-44	178	Triticum aestivum	Ta.3373.1.S1_at	CD936254	-	-	8e-4	At2g35360	ubiquitin family protein	C.G.	S.X.	Please select
0.15	3e-7	54	Vitis vinifera	1617187_at	CB973607	hypothetical protein LOC100254109	-	3e-4	At2g35360	ubiquitin family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage