Gene omics information

Query gene ID	Zm.10344.1.S1_at
Gene name	nrt2.1 protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.10344.1.S1_at	AY129953.1	nrt2.1 protein	-	2e-4	At1g08090	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	S.X.	H.G.	Please select
0.60	77.8	Zm.12180.1.A1_at	CD972903	hypothetical protein LOC100193381	-	1e-14	At1g71790	F-actin capping protein beta subunit family protein	S.X.	H.G.	Please select
0.59	76.1	Zm.10146.1.A1_at	BM338483	hypothetical protein LOC100279073	-	4e-1	At3g01940	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.17237.1.S1_at	CF635241	-	-	1e+0	At1g80865	unknown protein	S.X.	H.G.	Please select
0.38	44.2	Zm.12975.2.A1_a_at	CN845201	hypothetical protein LOC100191868	-	3e-2	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	S.X.	H.G.	Please select
0.18	11.6	Zm.7992.1.S1_at	BM340530	dcp1-like decapping family protein	-	3e-6	At1g08370	DCP1 (decapping 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.1	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.5	99.3	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-4	46	Zm.3369.1.A1_at	BM379459	glutamine synthetase1	-	4e-55	At5g35630	GS2 (GLUTAMINE SYNTHETASE 2)	C.G.	S.X.	Please select
0.02	3e-2	40	Zm.2297.1.A1_at	AW352507	hypothetical protein LOC100192643	-	4e-1	At3g06750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.7750.3.A1_at	CB604740	-	-	1e-22	At1g20010	TUB5	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.7750.3.S1_at	AY105255.1	-	-	3e-35	At5g62690	TUB2	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.2458.1.S1_at	CA403461	hypothetical protein LOC100273658	-	3e-108	At5g62700	TUB3	C.G.	S.X.	Please select
0.02	4e-1	36	Zm.9846.1.A1_at	BM340911	-	-	8e-2	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.9001.1.A1_a_at	CO534924	heavy metal-associated domain containing protein	-	5e+0	At5g05300	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.9001.1.A1_x_at	CO534924	heavy metal-associated domain containing protein	-	5e+0	At5g05300	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.9001.2.A1_at	AY111746.1	-	-	8e-5	At2g28660	copper-binding family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	2e-4	48	Arabidopsis thaliana	At1g08090	837327	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	5e-34	147	Glycine max	Gma.8482.1.S1_at	AF047718.1	NRT2 protein	-	1e-27	At5g60770	ATNRT2.4	C.G.	S.X.	Please select
0.65	0	728	Hordeum vulgare	Contig17222_at	Contig17222	-	-	4e-12	At1g08090	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	C.G.	S.X.	Please select
0.73	0	1427	Oryza sativa	Os02g0112600	AK109733.1	-	Membrane transporter	2e-8	At1g08090	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e-6	56	Populus trichocarpa	Ptp.5713.2.S1_a_at	AJ557585.1	high affinity nitrate transporter	-	7e-6	At5g60770	ATNRT2.4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	1e-148	527	Triticum aestivum	Ta.252.1.S1_x_at	AF288688.1	high affinity nitrate transporter TaNRT2	-	6e-8	At1g08090	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	C.G.	S.X.	Please select
0.02	1e+0	34	Vitis vinifera	1615969_at	CK138221.1	hypothetical protein LOC100262404	-	9e-5	At3g62070	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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