Gene omics information

Query gene ID	Zm.10332.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	76.1	Zm.10332.1.A1_at	BQ048110	-	-	2e+0	At3g28990	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.15817.1.A1_at	D87044.1	protein kinase catalytic domain	-	3e-8	At5g04870	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	S.X.	H.G.	Please select
0.53	69.1	Zm.12402.1.S1_at	AY109060.1	hypothetical protein LOC100193926	-	3e-7	At4g33000	CBL10 (CALCINEURIN B-LIKE 10)	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.571.1.S1_at	AI714687	Hypothetical protein LOC100191288	-	3e+0	At5g20230	ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)	S.X.	H.G.	Please select
0.50	65.7	Zm.2605.1.S1_at	AY105350.1	hypothetical protein LOC100192590	-	2e+0	At5g41670	6-phosphogluconate dehydrogenase family protein	S.X.	H.G.	Please select
0.21	15.5	Zm.5495.1.S1_at	AY103870.1	-	-	1e-30	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.8	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	1374	Zm.10332.1.A1_a_at	BQ048110	-	-	2e+0	At3g28990	unknown protein	C.G.	S.X.	Please select
0.44	0	636	Zm.10332.2.A1_at	BQ619505	-	-	2e+0	At3g28990	unknown protein	C.G.	S.X.	Please select
0.44	0	636	Zm.10332.2.S1_at	BQ619505	-	-	2e+0	At3g28990	unknown protein	C.G.	S.X.	Please select
0.29	6e-26	117	Zm.7938.1.A1_at	BM079591	glycosyltransferase	-	7e+0	At5g42567	-	C.G.	S.X.	Please select
0.03	8e-16	83	Zm.8111.1.S1_at	CD972041	-	-	7e-5	At1g75680	AtGH9B7 (Arabidopsis thaliana glycosyl hydrolase 9B7)	C.G.	S.X.	Please select
0.03	7e-1	34	Zm.15084.1.A1_at	BM350611	-	-	6e-2	At1g62240	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.13273.1.A1_a_at	CF627664	-	-	6e-1	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.13273.1.A1_at	CF627664	-	-	6e-1	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.7128.1.A1_a_at	BM333224	hypothetical protein LOC100276381	-	2e+0	At5g25290	F-box family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At3g28990	822539	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	Gma.11873.1.S1_at	CA819977	-	-	7e-2	At1g55230	unknown protein	C.G.	S.X.	Please select
0.42	9e-50	196	Hordeum vulgare	Contig12143_at	Contig12143	-	-	6e+0	At4g38150	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.19	6e-23	109	Oryza sativa	Os02g0330200	AK103888.1	-	Protein of unknown function DUF563 family protein	1e+0	At5g50175	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.26559.1.A1_at	CK091777	hypothetical protein	-	6e-2	At3g60540	sec61beta family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.47	4e-38	159	Triticum aestivum	TaAffx.129134.2.S1_at	CA641144	Glycosyltransferase	-	4e+0	At3g11160	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Vitis vinifera	1618176_at	CB836281	-	-	2e+0	At1g65170	ubiquitin carboxyl-terminal hydrolase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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