Gene omics information

Query gene ID	Zm.10267.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.10267.1.A1_at	BM660593	-	-	8e-2	At1g04445	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.56	74.4	Zm.19312.1.A1_at	BM336284	-	-	1e+1	At5g54660	heat shock protein-related	S.X.	H.G.	Please select
0.48	61.3	Zm.6064.1.S1_at	CF020510	low-molecular-weight cysteine-rich protein LCR70	-	4e+0	At4g04330	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.13484.1.A1_at	AY108906.1	-	-	3e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	S.X.	H.G.	Please select
0.44	55.7	Zm.5322.2.A1_a_at	CF632817	hypothetical protein LOC100273032	-	2e-60	At5g20000	26S proteasome AAA-ATPase subunit, putative	S.X.	H.G.	Please select
0.38	44.2	Zm.11384.1.A1_at	CB351291	-	-	7e-21	At3g21650	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	S.X.	H.G.	Please select
0.36	41.3	Zm.151.1.A1_at	AY107103.1	fatty acid desaturase7	-	7e-29	At5g05580	FAD8 (FATTY ACID DESATURASE 8)	S.X.	H.G.	Please select
0.34	37.2	Zm.1115.1.S1_at	AY104250.1	-	-	1e+0	At4g00210	LBD31 (LOB DOMAIN-CONTAINING PROTEIN 31)	S.X.	H.G.	Please select
0.33	36.0	Zm.5721.1.A1_a_at	AY105083.1	Hypothetical protein LOC100191423	-	9e-2	At4g12460	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)	S.X.	H.G.	Please select
0.26	22.7	Zm.658.1.S1_a_at	AF366295.1	dihydroflavanoid reductase-like1	-	2e+0	At5g26630	MADS-box protein (AGL35)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.7	99.9	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
25.9	99.6	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
22.8	99.5	GSM375795	Deep-sowing 10d treatment Control, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
17.4	99.1	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
16.8	99.1	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
10.5	98.4	GSM385708	Deep-sowing 10d treatment IAA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
9.6	98.3	GSM375794	Deep-sowing 10d treatment UCZ, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
8.4	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM375797	Deep-sowing 10d treatment UCZ, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
7.1	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-3	42	Zm.9750.1.A1_at	BM350639	-	-	5e+0	At1g62820	calmodulin, putative	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.1645.1.A1_at	AW573472	hypothetical protein LOC100276209	-	5e+0	At1g64561	unknown protein	C.G.	S.X.	Please select
0.03	8e-3	40	Zm.12139.1.A1_at	CF348985	EF-hand Ca2+-binding protein CCD1	-	5e-4	At3g50550	unknown protein	C.G.	S.X.	Please select
0.03	8e-3	40	Zm.11997.1.A1_at	BM382529	-	-	4e+0	At5g67010	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.9846.1.A1_at	BM340911	-	-	8e-2	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.4583.1.A1_at	AI737217	hypothetical protein LOC100280399	-	1e-6	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.3921.1.S1_at	AY107577.1	hypothetical protein LOC100276097	-	2e+1	At4g18930	cyclic phosphodiesterase	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.14190.1.S1_at	AF435816.1	thioredoxin h-like protein	-	2e+0	At4g25030	unknown protein	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.13648.1.S1_at	AY107241.1	caleosin related protein	-	2e+0	At1g70670	caleosin-related family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-2	38	Arabidopsis thaliana	At1g04445	839514	zinc finger (C2H2 type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	40	Glycine max	PsAffx.psZS009xF16f_at	PsAffx.psZS009xF16f	-	-	5e+0	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.09	1e-23	109	Hordeum vulgare	Contig12590_at	Contig12590	-	-	2e+0	At3g49570	LSU3 (RESPONSE TO LOW SULFUR 3)	C.G.	S.X.	Please select
0.13	2e-28	127	Oryza sativa	Os01g0955100	AK062671.1	-	Regulator of gene silencing	9e-2	At3g19580	AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.158679.1.S1_at	CX654069	hypothetical protein	-	3e-2	At5g05790	myb family transcription factor	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	1e-25	117	Triticum aestivum	TaAffx.59339.2.S1_at	CA602971	-	-	3e+0	At2g29920	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1613033_at	CB972358	hypothetical protein LOC100259176	-	2e-11	At5g66420	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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