Gene omics information

Query gene ID	Zm.10261.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.10261.1.A1_at	BM501576	-	-	4e-20	At5g62410	SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)	S.X.	H.G.	Please select
0.91	99.0	Zm.16508.1.S1_x_at	BE510313	ribosomal protein L39	-	4e-13	At4g31985	60S ribosomal protein L39 (RPL39C)	S.X.	H.G.	Please select
0.77	92.1	Zm.8357.1.A1_at	BM267266	-	-	1e-4	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	S.X.	H.G.	Please select
0.71	88.2	Zm.9526.1.A1_at	AY110244.1	long-chain-fatty-acid-CoA ligase-like protein	-	2e-3	At3g16170	acyl-activating enzyme 13 (AAE13)	S.X.	H.G.	Please select
0.53	69.1	Zm.16779.1.A1_at	CF626512	hypothetical protein LOC100216924	-	2e-3	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	S.X.	H.G.	Please select
0.46	58.4	Zm.11827.1.A1_at	BM381077	hypothetical protein LOC100192043	-	4e+0	At3g55820	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.2	98.4	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.6	98.3	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.3	98.2	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.2	98.2	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.1	98.2	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.9	98.2	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.6	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.2	98.0	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.7	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	0	1330	Zm.10261.1.S1_at	AY112633.1	-	-	1e-17	At3g47460	ATSMC2	C.G.	S.X.	Please select
0.01	2e-1	38	Zm.17108.1.S1_at	CF972407	hypothetical protein LOC100216670	-	8e-31	At3g46830	ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C)	C.G.	S.X.	Please select
0.01	2e-1	38	Zm.13490.1.A1_at	CD997217	-	-	4e-8	At3g54670	TTN8 (TITAN8)	C.G.	S.X.	Please select
0.01	9e-1	36	Zm.4081.1.A1_at	BM382137	-	-	1e-1	At4g29160	SNF7.1	C.G.	S.X.	Please select
0.01	9e-1	36	Zm.3422.2.A1_at	AY104377.1	hypothetical protein LOC100191154	-	1e-20	At2g05840	PAA2 (20S PROTEASOME SUBUNIT PAA2)	C.G.	S.X.	Please select
0.01	9e-1	36	Zm.3422.1.A1_at	CO522674	maize 20S proteasome alpha subunit	-	5e-26	At5g35590	PAA1 (PROTEASOME ALPHA SUBUNIT A 1)	C.G.	S.X.	Please select
0.01	9e-1	36	Zm.3422.1.A1_a_at	CO522674	hypothetical protein LOC100191154 /// maize 20S proteasome alpha subunit	-	5e-26	At5g35590	PAA1 (PROTEASOME ALPHA SUBUNIT A 1)	C.G.	S.X.	Please select
0.01	9e-1	36	Zm.24.1.S1_at	M60214.1	viviparous1	-	3e-17	At3g24650	ABI3 (ABA INSENSITIVE 3)	C.G.	S.X.	Please select
0.01	9e-1	36	Zm.18109.1.S1_s_at	AI881274	transglutaminase	-	3e+0	At4g23340	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	4e-20	101	Arabidopsis thaliana	At5g62410	836362	SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)	SMC2-1 (SMC2)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	2e-16	89	Glycine max	PsAffx.C32000069_at	PsAffx.C32000069	-	-	2e-8	At5g62410	SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)	C.G.	S.X.	Please select
0.16	1e-145	517	Hordeum vulgare	Contig25030_s_at	Contig25030	-	-	2e-30	At3g47460	ATSMC2	C.G.	S.X.	Please select
0.63	4e-145	517	Oryza sativa	Os01g0904400	AK103514.1	-	SMC2-1	1e-29	At5g62410	SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	2e-26	123	Populus trichocarpa	PtpAffx.220146.1.S1_at	pmrna36497	condensin complex components subunit	-	7e-111	At3g47460	ATSMC2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	3e-135	484	Triticum aestivum	Ta.20443.1.A1_at	CK209036	-	-	4e-45	At5g62410	SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)	C.G.	S.X.	Please select
0.01	4e-2	40	Vitis vinifera	1615368_at	CF204370.1	hypothetical protein LOC100250021	-	4e-13	At2g44860	60S ribosomal protein L24, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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