Gene omics information

Query gene ID	Zm.10174.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.10174.1.S1_at	AY111125.1	-	-	4e+0	At2g47370	-	S.X.	H.G.	Please select
0.77	92.1	Zm.14428.1.S1_at	AY106109.1	cyclin-L2	-	4e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	S.X.	H.G.	Please select
0.73	89.9	Zm.16513.6.A1_at	AI834422	hypothetical protein LOC100191561	-	0	At5g09810	ACT7 (ACTIN 7)	S.X.	H.G.	Please select
0.67	85.8	Zm.6874.2.S1_a_at	CF637577	hypothetical protein LOC100193230	-	3e-3	At2g45430	DNA-binding protein-related	S.X.	H.G.	Please select
0.60	77.8	Zm.554.1.A1_at	CF630610	glutathione transferase28	-	1e-1	At1g17170	ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24)	S.X.	H.G.	Please select
0.50	65.7	Zm.18270.1.A1_at	CA399376	Hypothetical protein LOC100194036	-	3e-6	At4g37200	HCF164	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.7	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.4	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.7	99.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.2	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.9	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1124	Zm.10174.1.A1_at	AY111125.1	-	-	4e+0	At2g47370	-	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.3634.1.A1_at	CF638013	jasmonate-induced protein	-	8e+0	At5g62210	embryo-specific protein-related	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.869.2.A1_at	AI711751	Hypothetical protein LOC100192365	-	6e+0	At5g15560	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.869.2.S1_at	AI711751	Hypothetical protein LOC100192365	-	6e+0	At5g15560	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.869.1.A1_a_at	BQ539517	hypothetical protein LOC100192365	-	4e+0	At5g23750	remorin family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.869.1.A1_x_at	BQ539517	hypothetical protein LOC100192365	-	4e+0	At5g23750	remorin family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.3635.1.A1_at	CF630819	IDP204 protein	-	2e-1	At1g70700	TIFY7	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.2016.1.S1_at	AW566149	zinc finger, C3HC4 type family protein	-	2e+0	At5g51195	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.18978.1.A1_at	CO535021	F-box domain containing protein	-	9e-5	At1g10780	F-box family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	32	Arabidopsis thaliana	At2g47370	819350	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	PsAffx.CL2159Contig1_at	PsAffx.CL2159Contig1	-	-	1e+0	At1g12810	proline-rich family protein	C.G.	S.X.	Please select
0.03	3e-2	38	Hordeum vulgare	Contig15476_at	Contig15476	-	-	2e+0	At1g48325	Expressed protein	C.G.	S.X.	Please select
0.04	2e-3	44	Oryza sativa	Os03g0556600	AK066162.1	-	-	2e-9	At4g21380	ARK3 (A. THALIANA RECEPTOR KINASE 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Populus trichocarpa	PtpAffx.717.1.A1_at	CV283282	-	-	8e-2	At4g38830	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e-1	36	Triticum aestivum	Ta.8457.3.S1_at	BJ268640	-	-	1e+0	At2g22430	ATHB6	C.G.	S.X.	Please select
0.05	5e+0	30	Vitis vinifera	1619886_at	CF414305	-	-	5e+0	At5g58590	RANBP1 (RAN BINDING PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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