Gene omics information

Query gene ID	Zm.10148.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.10148.1.A1_at	BM382070	-	-	3e-1	At4g18620	-	S.X.	H.G.	Please select
0.91	99.0	Zm.19339.1.A1_at	BM268084	hypothetical protein LOC100193934	-	4e-7	At1g08250	ADT6 (arogenate dehydratase 6)	S.X.	H.G.	Please select
0.91	99.0	Zm.19338.1.S1_at	CO520504	-	-	4e-2	At1g30870	cationic peroxidase, putative	S.X.	H.G.	Please select
0.67	85.8	Zm.10557.1.A1_a_at	CK347884	hypothetical protein LOC100280344 /// agmatine deiminase	-	6e-6	At5g08170	EMB1873 (EMBRYO DEFECTIVE 1873)	S.X.	H.G.	Please select
0.53	69.1	Zm.6751.1.A1_at	BG873976	hypothetical protein LOC100274772	-	4e-5	At3g62580	-	S.X.	H.G.	Please select
0.20	14.2	ZmAffx.957.1.A1_at	AI833524	-	-	3e+0	At2g40995	-	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.9	98.9	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
14.3	98.9	GSM206288	Upper pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.5	98.6	GSM206300	Upper pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.0	98.5	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.9	98.3	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.7	98.3	GSM206334	Lower pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.1	98.0	GSM206322	Lower pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.9	97.7	GSM206299	Left pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.8	97.6	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.3	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	9e-123	438	Zm.15884.1.A1_at	BM498962	auxin induced protein	-	1e+0	At4g27280	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.25	2e-28	125	Zm.3498.1.A1_a_at	CK367906	metallothionein1	-	2e+0	At5g64690	neurofilament triplet H protein-related	C.G.	S.X.	Please select
0.10	9e-15	79	Zm.11644.1.A1_at	BM379588	SAUR55 - auxin-responsive SAUR family member	-	2e+1	At3g48298	unknown protein	C.G.	S.X.	Please select
0.15	5e-10	63	Zm.7363.1.A1_at	BM079340	SAUR55 - auxin-responsive SAUR family member	-	6e+0	At4g24950	unknown protein	C.G.	S.X.	Please select
0.04	2e-3	42	Zm.5871.1.A1_at	BM339000	SAUR36 - auxin-responsive SAUR family member	-	2e+0	At5g66260	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.8611.2.A1_at	BM340740	rapid alkalinization factor 1	-	2e+0	At2g05600	-	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.4590.1.S1_a_at	CD446584	Alpha-tubulin #3	-	4e-179	At1g50010	TUA2	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.8611.1.A1_at	BM339289	hypothetical protein LOC100276849	-	1e-1	At5g19590	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7835.1.A1_at	BM080640	hypothetical protein LOC100273770	-	6e+0	At2g44670	senescence-associated protein-related	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At4g18620	827596	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	PsAffx.psMC007xD18f_s_at	PsAffx.psMC007xD18f	-	-	1e+1	At3g59370	unknown protein	C.G.	S.X.	Please select
0.11	5e-1	34	Hordeum vulgare	Contig15250_at	Contig15250	-	-	1e+0	At5g26670	pectinacetylesterase, putative	C.G.	S.X.	Please select
0.33	4e-17	89	Oryza sativa	OsAffx.18028.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.134005.1.A1_at	CV253586	-	-	1e+0	At3g07680	emp24/gp25L/p24 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	8e-8	57	Triticum aestivum	Ta.18273.1.S1_at	CA633021	-	-	4e+0	At1g08570	ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1614256_at	CB002433	hypothetical protein LOC100253803	-	2e-1	At4g18620	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage