Gene omics information

Query gene ID	Zm.10125.1.A1_a_at
Gene name	cytidine/deoxycytidylate deaminase family protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	Zm.10125.1.A1_a_at	CF628795	cytidine/deoxycytidylate deaminase family protein	-	5e-1	At5g29807	unknown protein	S.X.	H.G.	Please select
0.57	75.1	Zm.5502.1.A1_at	BM378399	hypothetical protein LOC100274214	-	1e-2	At1g14330	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.19034.1.S1_at	BQ833817	-	-	1e+1	At4g32900	aminoacyl-tRNA hydrolase	S.X.	H.G.	Please select
0.40	48.5	Zm.17671.1.S1_at	CK369711	-	-	3e+0	At2g39510	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.20	14.2	Zm.11708.1.A1_at	BM380110	hypothetical protein LOC100279180	-	5e+0	At3g61530	PANB2	S.X.	H.G.	Please select
0.14	7.7	ZmAffx.934.1.A1_at	AI795526	-	-	2e-1	At2g45990	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.1	99.4	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
15.8	99.0	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320473	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.93	0	1596	Zm.10125.1.A1_x_at	CF628795	cytidine/deoxycytidylate deaminase family protein	-	5e-1	At5g29807	unknown protein	C.G.	S.X.	Please select
0.52	5e-178	623	Zm.10125.2.A1_x_at	BM380760	cytidine/deoxycytidylate deaminase family protein	-	4e+0	At2g46230	-	C.G.	S.X.	Please select
0.49	4e-154	543	Zm.10125.3.A1_x_at	BM381172	cytidine/deoxycytidylate deaminase family protein	-	4e+0	At1g47265	unknown protein	C.G.	S.X.	Please select
0.14	9e-44	176	Zm.1639.3.S1_at	BG842159	-	-	5e+0	At4g22920	NYE1 (NON-YELLOWING 1)	C.G.	S.X.	Please select
0.09	3e-37	155	Zm.8907.1.A1_at	BG320013	chlorophyll a-b binding protein 4	-	8e-1	At1g45474	LHCA5	C.G.	S.X.	Please select
0.09	3e-37	155	Zm.8907.1.A1_x_at	BG320013	light harvesting complex a/b protein4	-	8e-1	At1g45474	LHCA5	C.G.	S.X.	Please select
0.12	5e-36	151	Zm.5963.1.S1_at	BG842522	hypothetical protein LOC100193568	-	5e-13	At2g47640	small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative	C.G.	S.X.	Please select
0.12	8e-35	147	Zm.16213.1.S1_at	CF016952	hypothetical protein LOC100216627	-	7e+0	At3g29270	ubiquitin-protein ligase	C.G.	S.X.	Please select
0.10	8e-35	147	Zm.13070.1.A1_at	CA404067	protein recA	-	2e-37	At1g79050	DNA repair protein recA	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	36	Arabidopsis thaliana	At5g29807	6240251	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e-1	36	Glycine max	HgAffx.11084.1.S1_at	CB935370	-	-	4e+0	At5g56710	60S ribosomal protein L31 (RPL31C)	C.G.	S.X.	Please select
0.03	2e-1	36	Hordeum vulgare	Contig13408_at	Contig13408	-	-	3e-1	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please select
0.03	4e-3	44	Oryza sativa	Os04g0653800	9632.m05452	-	-	3e+0	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.217769.1.S1_at	pmrna33164	hypothetical protein	-	9e-1	At4g28280	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	4e-23	109	Triticum aestivum	Ta.17675.1.S1_at	CA623343	-	-	9e+0	At5g43140	peroxisomal membrane 22 kDa family protein	C.G.	S.X.	Please select
0.02	4e-2	38	Vitis vinifera	1610316_at	CD799041	hypothetical protein LOC100245585	-	1e-3	At5g59040	COPT3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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