Gene omics information

Query gene ID	Zm.10073.1.A1_at
Gene name	protein AATF
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.10073.1.A1_at	BM378953	protein AATF	-	1e+0	At1g75460	ATP-dependent protease La (LON) domain-containing protein	S.X.	H.G.	Please select
0.60	77.8	Zm.5990.1.S1_a_at	AY111300.1	-	-	2e-6	At5g49980	AFB5 (Auxin F-Box protein 5)	S.X.	H.G.	Please select
0.44	55.7	Zm.3903.1.S1_at	AW438311	-	-	1e+0	At5g02110	CYCD7	S.X.	H.G.	Please select
0.40	48.5	Zm.8972.1.S1_at	CD435957	hypothetical protein LOC100217237	-	7e-17	At3g54320	WRI1 (WRINKLED 1)	S.X.	H.G.	Please select
0.35	38.9	Zm.16705.1.S1_at	BM501579	-	-	3e-1	At1g16430	surfeit locus protein 5 family protein / SURF5 family protein	S.X.	H.G.	Please select
0.29	28.1	Zm.5976.2.S1_at	BG265782	-	-	3e+0	At5g40080	60S ribosomal protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.3	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.3	96.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM375794	Deep-sowing 10d treatment UCZ, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	1e-127	454	Zm.12841.1.A1_at	CA400132	-	-	9e-13	At5g61330	rRNA processing protein-related	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.8874.1.A1_at	AY109677.1	ribonuclease P	-	4e-5	At1g76010	nucleic acid binding	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4884.1.A1_at	AY110577.1	R-interacting factor 1	-	1e-1	At4g03120	proline-rich family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.17139.1.A1_at	AI737374	myosin VIII ZMM3	-	8e-43	At3g19960	ATM1 (ARABIDOPSIS THALIANA MYOSIN 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.16824.1.S1_at	CF602732	SAM domain family protein	-	5e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.16824.1.S1_a_at	CF602732	SAM domain family protein	-	5e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.01	7e+0	30	ZmAffx.1427.1.S1_at	11990232-12	-	-	5e-170	Atcg00190	-	C.G.	S.X.	Please select
0.04	7e+0	30	ZmAffx.1172.1.A1_at	AW787638	-	-	5e+0	At1g15165	U-box domain-containing protein	C.G.	S.X.	Please select
0.04	7e+0	30	ZmAffx.1172.1.S1_at	AW787638	hypothetical protein LOC100273964	-	5e+0	At1g15165	U-box domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At1g75460	843882	ATP-dependent protease La (LON) domain-containing protein	F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	3e-5	50	Glycine max	GmaAffx.76994.1.S1_at	BU548814	-	-	3e-5	At5g61330	rRNA processing protein-related	C.G.	S.X.	Please select
0.20	1e-32	139	Hordeum vulgare	Contig9605_at	Contig9605	-	-	4e-12	At5g61330	rRNA processing protein-related	C.G.	S.X.	Please select
0.21	3e-64	246	Oryza sativa	Os01g0526200	AK063442.1	-	Conserved hypothetical protein	6e-5	At5g61330	rRNA processing protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	PtpAffx.69199.1.A1_at	CV266992	-	-	8e-2	At3g24280	SMAP2 (small acidic protein 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	2e-39	163	Triticum aestivum	Ta.9448.1.A1_at	BJ300181	-	-	5e-6	At5g61330	rRNA processing protein-related	C.G.	S.X.	Please select
0.04	3e-1	34	Vitis vinifera	1621438_x_at	CF206602.1	-	-	2e+0	At4g23770	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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