Gene omics information

Query gene ID	Zm.10062.1.A1_at
Gene name	hypothetical protein LOC100280233
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	Zm.10062.1.A1_at	BM378648	hypothetical protein LOC100280233	-	4e-4	At5g16000	NIK1 (NSP-INTERACTING KINASE 1)	S.X.	H.G.	Please select
0.36	41.3	Zm.6295.1.A1_at	AY107687.1	NADH-ubiquinone oxidoreductase B18 subunit	-	2e+0	At3g55670	-	S.X.	H.G.	Please select
0.18	11.6	Zm.2862.2.A1_a_at	AY112482.1	calnexin	-	2e-44	At5g07340	calnexin, putative	S.X.	H.G.	Please select
0.17	10.6	Zm.7932.1.A1_at	BM378311	hypothetical protein LOC100278269	-	2e-2	At5g20165	unknown protein	S.X.	H.G.	Please select
0.08	3.4	Zm.3236.1.S1_at	BG837635	hypothetical protein LOC100279928	-	3e-1	At5g03350	legume lectin family protein	S.X.	H.G.	Please select
0.07	2.9	Zm.5515.1.A1_at	CF631927	-	-	3e+0	At2g01580	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.2	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-8	59	Zm.338.1.A1_at	CF626535	somatic embryogenesis receptor-like kinase1	-	4e-34	At1g71830	SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1)	C.G.	S.X.	Please select
0.03	5e-5	48	Zm.7889.1.A1_at	AW091189	Somatic embryogenesis receptor-like kinase3	-	7e-30	At4g33430	BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)	C.G.	S.X.	Please select
0.06	7e-4	44	Zm.14026.1.S1_at	AY104736.1	hypothetical protein LOC100194188	-	4e-46	At1g71830	SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.13062.1.A1_at	BG268629	Hypothetical protein LOC100193834	-	2e-1	At4g33750	-	C.G.	S.X.	Please select
0.06	7e-1	34	Zm.10753.1.A1_at	BQ539394	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1	-	2e-2	At3g15890	protein kinase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.9186.1.A1_at	CB334436	hypothetical protein LOC100278549	-	3e+0	At3g55605	mitochondrial glycoprotein family protein / MAM33 family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.7709.1.A1_at	BM269078	hypothetical protein LOC100280092	-	5e-1	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.6307.1.A1_at	AI691328	-	-	7e-32	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.19155.1.S1_at	CA401905	calcium-dependent protein kinase, isoform 2	-	9e-29	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-4	46	Arabidopsis thaliana	At5g16000	831457	NIK1 (NSP-INTERACTING KINASE 1)	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	3e-9	63	Glycine max	Gma.1808.1.S1_at	AW309911	-	-	4e-54	At1g60800	NIK3 (NSP-INTERACTING KINASE 3)	C.G.	S.X.	Please select
0.08	8e-7	54	Hordeum vulgare	Contig20622_at	Contig20622	-	-	6e-12	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	C.G.	S.X.	Please select
0.25	1e-70	268	Oryza sativa	Os02g0728500	AK073972.1	-	Receptor protein kinase-like protein	6e-9	At4g30520	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	1e-11	71	Populus trichocarpa	PtpAffx.102970.1.A1_at	CN549756	hypothetical protein	-	3e-14	At4g30520	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	2e-49	196	Triticum aestivum	Ta.5488.1.A1_at	BG608010	-	-	2e-3	At4g30520	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please select
0.08	3e-8	57	Vitis vinifera	1609302_at	CB979609	similar to somatic embryogenesis receptor kinase	-	7e-14	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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