CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Z48624_x_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.48 63.2 Z48624_x_at Z48624 - - 5e-4 At4g39260 GR-RBP8 S.X. H.G.
0.46 61.0 HV04B24u_at HV04B24u - - 2e+1 At5g65260 polyadenylate-binding protein family protein / PABP family protein S.X. H.G.
0.40 53.1 HW06C04u_x_at HW06C04u - - 7e+0 At3g05980 unknown protein S.X. H.G.
0.24 27.2 HT12H07u_x_at HT12H07u - - 8e+0 At5g64552 CPuORF22 (Conserved peptide upstream open reading frame 22) S.X. H.G.
0.19 19.6 S0000800150H08F1_x_at S0000800150H08F1 - - 9e-10 At5g35530 40S ribosomal protein S3 (RPS3C) S.X. H.G.
0.17 16.9 Contig6402_at Contig6402 - - 4e-1 At1g65710 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.7 99.8 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
21.5 99.8 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
16.2 99.6 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
8.2 98.7 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
7.0 98.4 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.1 96.2 GSM372977 genotype: 11542 - pathogen isolates: 5874 - time: 8 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7 95.5 GSM261054 Bonus Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7 95.5 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6 95.3 GSM261053 Bonus Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5 95.1 GSM261059 Xantha b-12 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 4e-151 533 Contig541_x_at Contig541 - - 1e-23 At2g21580 40S ribosomal protein S25 (RPS25B) C.G. S.X.
0.65 2e-143 508 Contig471_s_at Contig471 - - 3e-4 At4g39260 GR-RBP8 C.G. S.X.
0.62 2e-125 448 Contig64_at Contig64 - - 2e-2 At4g39260 GR-RBP8 C.G. S.X.
0.40 3e-102 371 HVSMEn0011A10f_x_at HVSMEn0011A10f - - 2e+0 At3g47990 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.34 9e-81 299 Contig360_x_at Contig360 - - 6e+0 At2g18350 AtHB24 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24) C.G. S.X.
0.12 2e-60 232 Contig328_at Contig328 - - 2e+0 At3g49300 proline-rich family protein C.G. S.X.
0.25 1e-52 206 HS16M03u_x_at HS16M03u - - 5e+0 At3g13540 ATMYB5 (MYB DOMAIN PROTEIN 5) C.G. S.X.
0.23 2e-23 109 Contig17116_at Contig17116 - - 2e+0 At4g39260 GR-RBP8 C.G. S.X.
0.02 1e-2 40 Contig16955_at Contig16955 - - 1e-1 At5g06160 ATO (ATROPOS) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 5e-4 46 Arabidopsis thaliana At4g39260 830082 GR-RBP8 Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). - - - C.G. S.X.
0.04 2e-1 38 Glycine max PsAffx.C115000011_at PsAffx.C115000011 - - 3e+0 At4g18100 60S ribosomal protein L32 (RPL32A) C.G. S.X.
0.26 2e-69 264 Oryza sativa Os12g0632000 BI797959 - Glycine-rich RNA-binding protein GRP1A 8e-1 At5g40970 unknown protein C.G. S.X.
0.04 2e-1 38 Populus trichocarpa Ptp.6970.3.S1_at CX175702 hypothetical protein - 4e-1 At4g38680 GRP2 (GLYCINE RICH PROTEIN 2) C.G. S.X.
0.40 3e-119 428 Triticum aestivum Ta.28783.1.S1_x_at U32310.1 single-stranded nucleic acid binding protein - 5e-4 At4g39260 GR-RBP8 C.G. S.X.
0.22 4e-14 77 Vitis vinifera 1621554_s_at CF511998 similar to Os03g0670700 - 4e-6 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
0.22 1e-30 133 Zea mays Zm.1305.1.S1_at AF034945.1 glycine-rich RNA binding protein - 1e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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