Gene omics information

Query gene ID	V00087.1_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	S.X.	H.G.	Please select
0.73	88.7	HY06F24u_x_at	HY06F24u	-	-	1e+1	At5g05710	pleckstrin homology (PH) domain-containing protein	S.X.	H.G.	Please select
0.67	84.7	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	S.X.	H.G.	Please select
0.55	72.0	HY02C19u_at	HY02C19u	-	-	5e+0	At4g15610	integral membrane family protein	S.X.	H.G.	Please select
0.50	66.9	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	S.X.	H.G.	Please select
0.42	55.2	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.0	97.2	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
4.5	96.7	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
4.5	96.7	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
4.5	96.7	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
3.9	95.8	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
3.9	95.8	GSM160744	drought control rep2	GSE6990	Barley drought stress
3.8	95.7	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress
3.7	95.5	GSM261035	Dicktoo-chilling-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.7	95.5	GSM160464	drought control rep1	GSE6990	Barley drought stress
3.6	95.3	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.83	0	3443	A06498.1_s_at	A06498.1	-	-	9e-1	At4g28350	lectin protein kinase family protein	C.G.	S.X.	Please select
0.01	6e-1	36	Contig6382_s_at	Contig6382	-	-	4e-9	At3g24503	ALDH2C4	C.G.	S.X.	Please select
0.01	2e+0	34	Contig24446_at	Contig24446	-	-	2e+1	At5g22440	60S ribosomal protein L10A (RPL10aC)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig1481_x_at	Contig1481	-	-	1e-5	At4g19003	VPS25	C.G.	S.X.	Please select
0.01	2e+0	34	Contig11787_at	Contig11787	-	-	2e-1	At1g31380	-	C.G.	S.X.	Please select
0.01	2e+0	34	Contig6774_at	Contig6774	-	-	2e-34	At5g61960	AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig5909_at	Contig5909	-	-	4e-12	At3g12250	TGA6 (TGACG MOTIF-BINDING FACTOR 6)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig1971_at	Contig1971	-	-	2e+0	At4g32030	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig1481_at	Contig1481	-	-	1e-5	At4g19003	VPS25	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	38	Arabidopsis thaliana	At5g43525	3771420	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	7e+0	34	Glycine max	PsAffx.C254000006_s_at	PsAffx.C254000006	-	-	1e+1	At4g33960	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	36	Oryza sativa	OsAffx.24764.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	1e-1	40	Populus trichocarpa	PtpAffx.28733.1.S1_at	AY491499.1	-	-	3e+1	At5g35688	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	1e+0	36	Triticum aestivum	TaAffx.108924.1.S1_at	CA682357	-	-	7e-1	At1g78815	LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)	C.G.	S.X.	Please select
0.02	6e+0	32	Vitis vinifera	1616559_at	CA814615	hypothetical protein LOC100254834	-	6e-3	At1g04530	binding	C.G.	S.X.	Please select
0.01	2e+0	34	Zea mays	Zm.5834.1.A1_a_at	BM335098	-	-	6e+0	At4g01260	transcription regulator	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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